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Chapter 2 : Neighborhoods and Community Involvement: No Microbe Is an Island

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Abstract:

The most important thing which must be understood about microorganisms in their environments is that no microbe exists by itself. Microbes form the understructure which supports what we perceive as being the macrobial realm. The fact that this assemblage of microbes and macrobes has evolved together binds it together. No single species selected out of this assemblage could survive for very long on its own in the wild without the biological activity provided by those species which occupy the connecting niches. The degree of species diversity within communities can vary enormously. Communities typically may have several, many, or innumerable species. The indigenous populations that make up the community are responsible for the biotic balance that is maintained. They regulate the population densities or biomass of the individual component species of the community, and they act to prevent the establishment of invading species. Many types of microorganisms feed upon other microorganisms. Often, the same microbes which did the feeding then serve as prey and hosts for other microorganisms and macroorganisms in elaborate food chains. Climate is an important consideration for microbes, and there is a microbial geography. An obvious need that must be satisfied for an organism to become established is the presence of all nutrients that it requires. Knowledge of microbial community structure and community function has a key role in improving our lives. Furthermore, this knowledge will aid in understanding ways of maintaining the environment and its microbial communities.

Citation: Hurst C. 2007. Neighborhoods and Community Involvement: No Microbe Is an Island, p 6-19. In Hurst C, Crawford R, Garland J, Lipson D, Mills A, Stetzenbach L (ed), Manual of Environmental Microbiology, Third Edition. ASM Press, Washington, DC. doi: 10.1128/9781555815882.ch2

Key Concept Ranking

Environmental Microbiology
0.91249454
Bacteria and Archaea
0.8327815
Microbial Communities in Environment
0.48123506
Viruses
0.45814294
Chemicals
0.42443913
Microbial Communities in Natural Environment
0.40136167
0.91249454
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References

/content/book/10.1128/9781555815882.ch02
1. Alexander, M. 1981. Why microbial predators and parasites do not eliminate their prey and hosts. Annu. Rev. Microbiol. 35:113133.
2. Ashelford, K. E.,, S. J. Norris,, J. C. Fry,, M. J. Bailey, and, M. J. Day. 2000. Seasonal population dynamics and interactions of competing bacteriophages and their host in the rhizosphere. Appl. Environ. Microbiol. 66:41934199.
3. Bäckhed, F.,, R. E. Ley,, J. L. Sonnenburg,, D. A. Peterson, and, J. I. Gordon. 2005. Host-bacterial mutualism in the human intestine. Science 307:19151920.
4. Banin, E.,, T. Israely,, A. Kushmaro,, Y. Loya,, E. Orr, and, E. Rosenberg. 2000. Penetration of the coral-bleaching bacterium Vibrio shiloi into Oculina patagonica. Appl. Environ. Microbiol. 66:30313036.
5. Berninger, U.-G.,, B. J. Finlay, and, P. Kuuppo-Leinikki. 1991. Protozoan control of bacterial abundance in freshwater. Limnol. Oceanogr. 36:139147.
6. Bloem, J.,, F. M. Ellenbroek,, M. J. B. Bar-Gilissen, and, T. E. Cappenberg. 1989. Protozoan grazing and bacterial production in stratified Lake Vechten estimated with fluorescently labeled bacteria and by thymidine incorporation. Appl. Environ. Microbiol. 55:17871795.
7. Boehm, A. B.,, D. P. Keymer, and, G. G. Shellenbarger. 2005. An analytical model of enterococci inactivation, grazing, and transport in the surf zone of a marine beach. Water Res. 39:35653578.
8. Burroughs, N. J.,, P. Marsh, and, E. M. H. Wellington. 2000. Mathematical analysis of growth and interaction dynamics of streptomycetes and a bacteriophage in soil. Appl. Environ. Microbiol. 66:38683877.
9. Carroll, L. 1998. Alice’s Adventures in Wonderland and Through the Looking-Glass, and What Alice Found There, Centenary ed., p. 186. Penguin Books, London, England.
10. Cole, J. J. 1982. Interactions between bacteria and algae in aquatic ecosystems. Annu. Rev. Ecol. Syst. 13:291294.
11. Costello, A. M.,, and M. E. Lidstrom. 1999. Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments. Appl. Environ. Microbiol. 65:50665074.
12. Cox, C. S. 1989. Airborne bacteria and viruses. Sci. Prog. (Oxford) 73:469499.
13. Cunliffe, D.,, C. A. Smart,, C. Alexander, and, E. N. Vulfson. 1999. Bacterial adhesion at synthetic surfaces. Appl. Environ. Microbiol. 65:49955002.
14. de Bok, F. A. M.,, C. M. Plugge, and, A. J. M. Stams. 2004. Interspecies electron transfer in methanogenic propionate degrading consortia. Water Res. 38:13681375.
15. Donne, J. 1994. Meditation XVII, p. 440–441. In C. M. Coffin (ed.), The Complete Poetry and Selected Prose of John Donne. The Modern Library, New York, N.Y.
16. Ducklow, H. W. 1984. Geographical ecology of marine bacteria: physical and chemical variability at the meso-scale, p. 22–31. In M. J. Klug and, C. A. Reddy (ed.), Current Perspectives in Microbial Ecology. American Society for Microbiology, Washington, D.C.
17. Fernandez, A. S.,, S. A. Hashsham,, S. L. Dollhopf,, L. Raskin,, O. Glagoleva,, F. B. Dazzo,, R. F. Hickey,, C. S. Criddle, and, J. M. Tiedje. 2000. Flexible community structure correlates with stable community function in methanogenic bioreactor communities perturbed by glucose. Appl. Environ. Microbiol. 66:40584067.
18. Ferry, J. G.,, and R. S. Wolfe. 1976. Anaerobic degradation of benzoate to methane by a microbial consortium. Arch. Microbiol. 107:3340.
19. Frederickson, J. K.,, and T. C. Onstott. 1996. Microbes deep inside the earth. Sci. Am. 275(4):6873.
20. Gamo, M.,, and T. Shoji. 1999. A method of profiling microbial communities based on a most-probable-number assay that uses BIOLOG plates and multiple sole carbon sources. Appl. Environ. Microbiol. 65:44194424.
21. Goffredi, S. K.,, A. Warén,, V. J. Orphan,, C. L. Van Dover, and, R. C. Vrijenhoek. 2004. Novel forms of structural integration between microbes and a hydrothermal vent gastropod from the Indian ocean. Appl. Environ. Microbiol. 70:30823090.
22. González-Toril, E.,, E. Llobet-Brossa,, E. O. Casamayor,, R. Amann, and, R. Amils. 2003. Microbial ecology of an extreme acidic environment, the Tinto River. Appl. Environ. Microbiol. 69:48534865.
23. Gradinger, R. 1999. Integrated abundance and biomass of sympagic meiofauna in Arctic and Antarctic pack ice. Polar Biol. 22:169177.
24. Gradinger, R. 1999. Vertical fine structure of the biomass and composition of algal communities in Arctic pack ice. Mar. Biol. 133:745754.
25. Gray, N. D.,, R. Howarth,, A. Rowan,, R. W. Pickup,, J. G. Jones, and, I. M. Head. 1999. Natural communities of Achromatium oxaliferum comprise genetically, morphologically, and ecologically distinct subpopulations. Appl. Environ. Microbiol. 65:50895099.
26. Günther, S.,, K. H. George, and, M. Gleitz. 1999. High sympagic metazoan abundance in platelet layers at Drescher Inlet, Weddell Sea, Antarctica. Polar Biol. 22:8289.
27. Hentschel, U.,, J. Hopke,, M. Horn,, A. B. Friedrich,, M. Wagner,, J. Hacker, and, B. S. Moore. 2002. Molecular evidence for a uniform microbial community in sponges from different oceans. Appl. Environ. Microbiol. 68:44314440.
28. Hurst, C. J. (ed.). 1991. Modeling the Environmental Fate of Microorganisms. American Society for Microbiology, Washington, D.C.
29. Hurst, C. J.,, and H. D. A. Lindquist. 2000. Defining the ecology of viruses, p. 3–40. In C. J. Hurst (ed.), Viral Ecology. Academic Press, Inc., San Diego, Calif.
30. Karl, D. M.,, D. F. Bird,, K. Björkman,, T. Houlihan,, R. Shackelford, and, L. Tupas. 1999. Microorganisms in the accreted ice of Lake Vostok, Antarctica. Science 286:21442147.
31. Kiørboe, T.,, K. Tang,, H.-P. Grossart, and, H. Ploug. 2003. Dynamics of microbial communities on marine snow aggregates: colonization, growth, detachment, and grazing mortality of attached bacteria. Appl. Environ. Microbiol. 69:30363047.
32. Knox, O. G. G.,, K. Killham,, R. R. E. Artz,, C. Mullins, and, M. Wilson. 2004. Effect of nematodes on rhizosphere colonization by seed-applied bacteria. Appl. Environ. Microbiol. 70:46664671.
33. Koropatnick, T. A.,, J. T. Engle,, M. A. Apicella,, E. V. Stabb,, W. E. Goldman, and, M. J. McFall-Ngai. 2004. Microbial factor-mediated development in a host-bacterial mutualism. Science 306:11861188.
34. Lima, S. A. C.,, M. Filomena,, J. Raposo,, P. M. L. Castro, and, R. M. Morais. 2004. Biodegradation of ρ-chlorophenol by a microalgae consortium. Water Res. 38:97102.
35. Lindow, S. E.,, and, M. T. Brandl. 2003. Microbiology of the phyllosphere. Appl. Environ. Microbiol. 69:18751883.
36. MacDonald, T. T.,, and G. Monteleone. 2005. Immunity, inflammation, and allergy in the gut. Science 307:19201925.
37. Madigan, M. T.,, J. M. Martinko, and, J. Parker. 2000. Bdellovibrio, p. 487–489. In P. F. Corey (ed.), Brock Biology of Microorganisms, 9th ed. Prentice-Hall, Upper Saddle River, N.J.
38. Mallory, L. M.,, C. S. Yuk,, L.-N. Liang, and, M. Alexander. 1983. Alternative prey: a mechanism for elimination of bacterial species by protozoa. Appl. Environ. Microbiol. 46:10731079.
39. Manson, M. D. 1992. Bacterial motility and chemotaxis. Adv. Microb. Physiol. 33:277346.
40. Murray, W. D. 1986. Symbiotic relationship of Bacteroides cellulosolvens and Clostridium saccharolyticum in cellulose fermentation. Appl. Environ. Microbiol. 51:710714.
41. Ohkuma, M.,, S. Noda, and, T. Kudo. 1999. Phylogenetic diversity of nitrogen fixation genes in the symbiotic microbial community in the gut of diverse termites. Appl. Environ. Microbiol. 65:49264934.
42. Oksanen, I.,, J. Jokela,, D. P. Fewer,, M. Wahlsten,, J. Rikkinen, and, K. Sivonen. 2004. Discovery of rare and highly toxic microcystins from lichen-associated cyano-bacterium Nostoc sp. strain IO-102-I. Appl. Environ. Microbiol. 70:57565763.
43. Pitelka, L. F., and the Plant Migration Workshop Group. 1997. Plant migration and climate change. Am. Sci. 85:464473.
44. Rønn, R.,, A. E. McCaig,, B. S. Griffiths, and, J. I. Prosser. 2002. Impact of protozoan grazing on bacterial community structure in soil microcosms. Appl. Environ. Microbiol. 68:60946105.
45. Sano, E.,, S. Carlson,, L. Wegley, and, F. Rohwer. 2004. Movement of viruses between biomes. Appl. Environ. Microbiol. 70:58425846.
46. Scheublin, T. R.,, K. P. Ridgway,, J. P. W. Young, and, M. G. A. van der Heijden. 2004. Nonlegumes, legumes, and root nodules harbor different arbuscular mycorrhizal fungal communities. Appl. Environ. Microbiol. 70:62406246.
47. Simberloff, D. 1989. Which insect introductions succeed and which fail?, p. 61–75. In J. A. Drake,, H. A. Mooney,, F. di Castri,, R. H. Groves,, F. J. Kruger,, M. Rejmanek, and, M. Williamson (ed.), Biological Invasions: a Global Perspective. John Wiley & Sons, Ltd., Chichester, England.
48. Staley, J. T. 1999. Bacterial biodiversity: a time for place. ASM News 65:681687.
49. Takai, K.,, T. Komatsu,, F. Inagaki, and, K. Horikoshi. 2001. Distribution of archaea in a black smoker chimney structure. Appl. Environ. Microbiol. 67:36183629.
50. Tett, P. 1987. Modelling the growth and distribution of marine microplankton, p. 387–425. In M. Fletcher,, T. R. G. Gray, and, J. G. Jones (ed.), Ecology of Microbial Communities. Cambridge University Press, Cambridge, United Kingdom.
51. van Schie, P. M.,, and M. Fletcher. 1999. Adhesion of biodegradative anaerobic bacteria to solid surfaces. Appl. Environ. Microbiol. 65:50825088.
52. Vetriani, C.,, H. W. Jannasch,, B. J. MacGregor,, D. A. Stahl, and, A.-L. Reysenbach. 1999. Population structure and phylogenetic characterizations of marine benthic archaea in deep-sea sediments. Appl. Environ. Microbiol. 65:43754384.
53. Voolapalli, R. K.,, and D. C. Stuckey. 1999. Relative importance of trophic group concentrations during anaerobic degradation of volatile fatty acids. Appl. Environ. Microbiol. 65:50095016.
54. Webster, N. S.,, L. D. Smith,, A. J. Heyward,, J. E. M. Watts,, R. I. Webb,, L. L. Blackall, and, A. P. Negri. 2004. Metamorphosis of a scleractinian coral in response to microbial biofilms. Appl. Environ. Microbiol. 70:12131221.
55. Weitzman, I. 1991. Epidemiology of blastomycosis and coccidiomycosis, p. 51–74. In D. K. Arora (ed.), Handbook of Applied Mycology, vol. 2. Marcel Dekker, New York, N.Y.

Tables

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TABLE 1

Examples of barriers applying to different species

Citation: Hurst C. 2007. Neighborhoods and Community Involvement: No Microbe Is an Island, p 6-19. In Hurst C, Crawford R, Garland J, Lipson D, Mills A, Stetzenbach L (ed), Manual of Environmental Microbiology, Third Edition. ASM Press, Washington, DC. doi: 10.1128/9781555815882.ch2

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