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Chapter 42 : , and Other Nonfermentative Gram-Negative Rods

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Abstract:

The organisms covered in this chapter belong to a group of taxonomically and phylogenetically diverse, gram-negative nonfermentative rods and coccobacilli. Still, several of the genera dealt with belong to the same family; i.e., , , , and belong to the family (), and , , , , , , , , and belong to the family . Most of the organisms described in the chapter are found in the environment, i.e., soil and water. The only fastidious species handled in the chapter are species, , species, and some species. The limited number of tests that have been used to discriminate between the species dealt with in the chapter have been selected because they can be carried out easily and quickly, they mostly yield uniform results per group or species, and also they are highly discriminatory. A recently developed method of bacterial identification is matrix-assisted laser desorption ionization–time-of-flight mass spectrometry, for which commercial systems, with bacterial mass spectrum databases, have become available recently. Decisions about performing antimicrobial susceptibility testing are complicated by the fact that the Clinical and Laboratory Standards Institute (CLSI) interpretive guidelines for disk diffusion testing of the nonfermenting gram-negative bacteria are limited to species, , , and species and therefore, except for species, do not include the organisms covered in the chapter.

Citation: Vaneechoutte M, Dijkshoorn L, Nemec A, Kämpfer P, Wauters G. 2011. , and Other Nonfermentative Gram-Negative Rods , p 714-738. In Versalovic J, Carroll K, Funke G, Jorgensen J, Landry M, Warnock D (ed), Manual of Clinical Microbiology, 10th Edition. ASM Press, Washington, DC. doi: 10.1128/9781555816728.ch42

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Gram-Negative Coccobacilli
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Gram-Negative Bacteria
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Gram-Positive Bacteria
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Lower Respiratory Tract Infections
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Antimicrobial Susceptibility Testing
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Bacteria
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Figures

Image of FIGURE 1
FIGURE 1

Identification of miscellaneous GNF. The organisms covered in this chapter belong to a group of taxonomically diverse, gram-negative nonfermentative rods and coccobacilli. They all share the common phenotypic features of failing to acidify the butt of KIA or TSI agar or of oxidative-fermentative media, indicating their inability to metabolize carbohydrates by the fermentative pathway. These characteristics are shared with those of the species of the emended genus (chapter 40) and those of the species of genera that previously were named as (chapter 41). grows slowly and poorly on SBA. forms small colonies as well, but these are already visible after 24 h of incubation.

Citation: Vaneechoutte M, Dijkshoorn L, Nemec A, Kämpfer P, Wauters G. 2011. , and Other Nonfermentative Gram-Negative Rods , p 714-738. In Versalovic J, Carroll K, Funke G, Jorgensen J, Landry M, Warnock D (ed), Manual of Clinical Microbiology, 10th Edition. ASM Press, Washington, DC. doi: 10.1128/9781555816728.ch42
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Image of FIGURE 2
FIGURE 2

Differences in the size of the colonies formed by different species isolated from human clinical specimens. The strains were grown on TSA (Oxoid) at 30°C for 24 h. (a) NIPH 384; (b) LUH 3792; (c) LUH 5832; (d) ATCC 19606.

Citation: Vaneechoutte M, Dijkshoorn L, Nemec A, Kämpfer P, Wauters G. 2011. , and Other Nonfermentative Gram-Negative Rods , p 714-738. In Versalovic J, Carroll K, Funke G, Jorgensen J, Landry M, Warnock D (ed), Manual of Clinical Microbiology, 10th Edition. ASM Press, Washington, DC. doi: 10.1128/9781555816728.ch42
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Image of FIGURE 3
FIGURE 3

Gram stain of , showing characteristic doughnut-shaped morphology.

Citation: Vaneechoutte M, Dijkshoorn L, Nemec A, Kämpfer P, Wauters G. 2011. , and Other Nonfermentative Gram-Negative Rods , p 714-738. In Versalovic J, Carroll K, Funke G, Jorgensen J, Landry M, Warnock D (ed), Manual of Clinical Microbiology, 10th Edition. ASM Press, Washington, DC. doi: 10.1128/9781555816728.ch42
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Image of FIGURE 4
FIGURE 4

Gram stain of showing pleomorphic gram-negative rods with vacuoles.

Citation: Vaneechoutte M, Dijkshoorn L, Nemec A, Kämpfer P, Wauters G. 2011. , and Other Nonfermentative Gram-Negative Rods , p 714-738. In Versalovic J, Carroll K, Funke G, Jorgensen J, Landry M, Warnock D (ed), Manual of Clinical Microbiology, 10th Edition. ASM Press, Washington, DC. doi: 10.1128/9781555816728.ch42
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Image of FIGURE 5
FIGURE 5

on Sabouraud dextrose agar showing pink mucoid colonies.

Citation: Vaneechoutte M, Dijkshoorn L, Nemec A, Kämpfer P, Wauters G. 2011. , and Other Nonfermentative Gram-Negative Rods , p 714-738. In Versalovic J, Carroll K, Funke G, Jorgensen J, Landry M, Warnock D (ed), Manual of Clinical Microbiology, 10th Edition. ASM Press, Washington, DC. doi: 10.1128/9781555816728.ch42
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References

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1. Adams, M. D.,, K. Goglin,, N. Molyneaux,, K. M. Hujer,, H. Lavender,, J. J. Jamison,, I. J. Macdonald,, K. M. Martin,, T. Russo,, A. A. Campagnari,, A. M. Hujer,, R. A. Bonomo,, and S. R. Gill. 2008. Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii. J. Bacteriol. 190: 8053 8064.
2. Adams, M. D.,, G. C. Nickel,, S. Bajaksouzian,, H. Lavender,, A. R. Murthy,, M. R. Jacobs,, and R. A. Bonomo. 2009. Resistance to colistin in Acinetobacter baumannii associated with mutations in the PmrAB two-component system. Antimicrob. Agents Chemother. 53: 3628 3634.
3. Anstey, N. M.,, B. J. Currie,, M. Hassell,, D. Palmer,, B. Dwyer,, and H. Seifert. 2002. Community-acquired bacteremic Acinetobacter pneumonia in tropical Australia is caused by diverse strains of Acinetobacter baumannii, with carriage in the throat in at-risk groups. J. Clin. Microbiol. 40: 685 686.
4. Arroyo, L. A.,, A. Garcia-Curiel,, M. E. Pachon-Ibanez,, A. C. Llanos,, M. Ruiz,, J. Pachon,, and J. Aznar. 2005. Reliability of the E-test method for detection of colistin resistance in clinical isolates of Acinetobacter baumannii. J. Clin. Microbiol. 43: 903 905.
5. Bachman, K. H.,, D. L. Sewell,, and L. J. Strausbaugh. 1996. Recurrent cellulitis and bacteremia caused by Flavobacterium odoratum. Clin. Infect. Dis. 22: 1112 1113.
6. Bartual, S. G.,, H. Seifert,, C. Hippler,, M. A. Luzon,, H. Wisplinghoff,, and F. Rodriguez-Valera. 2005. Development of a multilocus sequence typing scheme for characterization of clinical isolates of Acinetobacter baumannii. J. Clin. Microbiol. 43: 4382 4390.
7. Bayraktar, M. R.,, E. Aktas,, Y. Ersoy,, A. Cicek,, and R. Durmaz. 2007. Postoperative Chryseobacterium indologenes bloodstream infection caused by contamination of distillate water. Infect. Control Hosp. Epidemiol. 28: 368 369.
8. Bergogne-Bérézin, E.,, M. L. Joly-Guillou,, and K. J. Towner (ed.). 1996. Appendix II: selective isolation of Acinetobacter spp. by enrichment cultivation, p. 241 242. In Acinetobacter: Microbiology, Epidemiology, Infections, Management. CRC Press, Boca Raton, FL.
9. Bergogne-Bérézin, E.,, and K. J. Towner. 1996. Acinetobacter spp. as nosocomial pathogens: microbiological, clinical, and epidemiological features. Clin. Microbiol. Rev. 9: 148 165.
10. Berlau, J.,, H. Aucken,, H. Malnick,, and T. Pitt. 1999. Distribution of Acinetobacter species on skin of healthy humans. Eur. J. Clin. Microbiol. Infect. Dis. 18: 179 183.
11. Bernardet, J.-F.,, Y. Nakagawa,, and B. Holmes. 2002. Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int. J. Syst. Evol. Microbiol. 52: 1049 1070.
12. Bernards, A. T.,, J. van der Toorn,, C. P. A. van Boven,, and L. Dijkshoorn. 1996. Evaluation of the ability of a commercial system to identify Acinetobacter genomic species. Eur. J. Clin. Microbiol. Infect. Dis. 15: 303 308.
13. Bizet, C.,, and J. Bizet. 1995. Sensibilité comparée de Ochrobactrum anthropi, Agrobacterium tumefaciens, Alcaligenes faecalis, Alcaligenes denitrificans subsp . denitrificans, Alcaligenes denitrificans subsp. xylosoxidans et Bordetella bronchiseptica vis-à-vis de 35 antibiotiques dont 17 lactamines. Pathol. Biol. 43: 258 263.
14. Bloch, K. C.,, R. Nadarajah,, and R. Jacobs. 1997. Chryseobacterium meningosepticum: an emerging pathogen among immunocompromised adults. Medicine 76: 30 40.
15. Boerlin, P.,, S. Eugster,, F. Gaschen,, R. Straub,, and P. Schawalder. 2001. Transmission of opportunistic pathogens in a veterinary teaching hospital. Vet. Microbiol. 82: 347 359.
16. Bomb, K.,, A. Arora,, and N. Trehan. 2007. Endocarditis due to Chryseobacterium meningosepticum. Indian J. Med. Microbiol. 25: 161 162.
17. Bombicino, K. A.,, M. N. Almuzara,, A. M. Famiglietti,, and C. Vay. 2007. Evaluation of pyrrolidonyl arylamidase for the identification of nonfermenting Gram-negative rods. Diagn. Microbiol. Infect. Dis. 57: 101 103. (Erratum, 57:473.)
18. Boo, T. W.,, F. Walsh,, and B. Crowley. 2009. Molecular characterization of carbapenem-resistant Acinetobacter species in an Irish university hospital: predominance of Acinetobacter genomic species 3. J. Med. Microbiol. 58: 209 216.
19. Bosshard, P. P.,, R. Zbinden,, S. Abels,, B. Böddinghaus,, M. Altwegg,, and E. C. Böttger. 2006. 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting gram-negative bacteria in the clinical laboratory. J. Clin. Microbiol. 44: 1359 1366.
20. Botelho-Nevers, E.,, F. Gouriet,, C. Rovery,, P. Paris,, V. Roux,, D. Raoult,, and P. Brouqui. 2005. First case of osteomyelitis due to Shewanella algae. J. Clin. Microbiol. 43: 5388 5390.
21. Bouvet, P. J. M.,, and P. A. D. Grimont. 1986. Taxonomy of the genus Acinetobacter with the recognition of Acinetobacter baumannii sp. nov., Acinetobacter haemolyticus sp. nov., Acinetobacter johnsonii sp. nov., and Acinetobacter junii sp. nov. and emended descriptions of Acinetobacter calcoaceticus and Acinetobacter lwoffii. Int. J. Syst. Bacteriol. 36: 228 240.
22. Bouvet, P. J. M.,, and P. A. D. Grimont. 1987. Identification and biotyping of clinical isolates of Acinetobacter. Ann. Inst. Pasteur Microbiol. 138: 569 578.
23. Bouvet, P. J. M.,, and S. Jeanjean. 1989. Delineation of new proteolytic genomic species in the genus Acinetobacter. Res. Microbiol. 140: 291 299.
24. Bovre, K.,, J. E. Fuglesang,, N. Hagen,, E. Jantzen,, and L. O. Froholm. 1976. Moraxella atlantae sp. nov. and its distinction from Moraxella phenylpyrouvica. Int. J. Syst. Bacteriol. 26: 511 521.
25. Bowman, J. P.,, J. Cavanagh,, J. J. Austin,, and K. Sanderson. 1996. Novel Psychrobacter species from Antarctic ornithogenic soils. Int. J. Syst. Bacteriol. 46: 841 848.
26. Brown, R. B.,, D. Phillips,, M. J. Barker,, R. Pieczarka,, M. Sands,, and D. Teres. 1989. Outbreak of nosocomial Flavobacterium meningosepticum respiratory infections associated with use of aerosolized polymyxin B. Am. J. Infect. Control 17: 121 125.
27. Brown, W. J.,, R. L. Sautter,, and A. E. Crist, Jr. 1992. Susceptibility testing of clinical isolates of Methylobacterium species. Antimicrob. Agents Chemother. 36: 1635 1638.
28. Butt, A. A.,, J. Figueroa,, and D. H. Martin. 1997. Ocular infection caused by three unusual marine organisms. Clin. Infect. Dis. 24: 740.
29. Carr, E. L.,, P. Kämpfer,, B. K. Patel,, V. Gürtler,, and R. J. Seviour. 2003. Seven novel species of Acinetobacter isolated from activated sludge. Int. J. Syst. Evol. Microbiol. 53: 953 963.
30. Casalta, J. P.,, Y. Peloux,, D. Raoult,, P. Brunet,, and H. Gallais. 1989. Pneumonia and meningitis caused by a new nonfermentative unknown gram-negative bacterium. J. Clin. Microbiol. 27: 1446 1448.
31. Catry, B.,, F. Boyen,, M. Baele,, J. Dewulf,, A. De Kruif,, M. Vaneechoutte,, F. Haesebrouck,, and A. Decostere. 2007. Recovery of Moraxella ovis from the bovine respiratory tract and differentiation of Moraxella species by tDNA-intergenic spacer PCR. Vet. Microbiol. 120: 375 380.
32. Centers for Disease Controland Prevention. 2004. Acinetobacter baumannii infections among patients at military medical facilities treating injured U.S. service members, 2002-2004. MMWR Morb. Mortal. Wkly. Rep. 53: 10631066.
33. Ceyhan, M.,, I. Yildirim,, A. Tekeli,, M. Yurdakok,, E. Us,, B. Altun,, T. Kutluk,, A. B. Cengiz,, V. Gurbuz,, C. Barin,, A. Bagdat,, D. Cetinkaya,, D. Gur,, and O. Tuncel. 2008. A Chryseobacterium meningosepticum outbreak observed in 3 clusters involving both neonatal and non-neonatal pediatric patients. Am. J. Infect. Control 36: 453 457.
34. Chang, H. C.,, Y. F. Wei,, L. Dijkshoorn,, M. Vaneechoutte,, C. T. Tang,, and T. C. Chang. 2005. Species-level identification of isolates of the Acinetobacter calcoaceticus- Acinetobacter baumannii complex by sequence analysis of the 16S-23S rRNA gene spacer region. J. Clin. Microbiol. 43: 1632 1639.
35. Chang, J.-C.,, P.-R. Hsueh,, J.-J. Wu,, S.-W. Ho,, W.-C. Hsieh,, and K.-T. Luh. 1997. Antimicrobial susceptibility of flavobacteria as determined by agar dilution and disk diffusion methods. Antimicrob. Agents Chemother. 41: 1301 1306.
36. Chen, Y.-S.,, Y.-C. Liu,, M.-Y. Yen,, J.-H. Wang,, J.-H. Wang,, S.-R. Wann,, and D.-L. Cheng. 1997. Skin and soft-tissue manifestations of Shewanella putrefaciens infection. Clin. Infect. Dis. 25: 225 229.
37. Chiron, R.,, H. Marchandin,, F. Counil,, E. Jumas-Bilak,, A. M. Freydiere,, G. Bellon,, M. O. Husson,, D. Turck,, F. Bremont,, G. Chabanon,, and C. Segonds. 2005. Clinical and microbiological features of Inquilinus sp. isolates from five patients with cystic fibrosis. J. Clin. Microbiol. 43: 3938 3943.
38. Chiu, C.-H.,, M. Waddingdon,, W.-S. Hsieh,, D. Greenberg,, P. C. Schreckenberger,, and A. M. Carnahan. 2000. Atypical Chryseobacterium meningosepticum and meningitis and sepsis in newborns and the immunocompromised, Taiwan. Emerg. Infect. Dis. 6: 481 486.
39. Chu, Y. W.,, T. K. Cheung,, M. Y. Chu,, J. Y. Lo,, and L. Dijkshoorn. 2009. OXA-23-type imipenem resistance in Acinetobacter baumannii in Hong Kong. Int. J. Antimicrob. Agents 34: 285 286.
40. Chu, Y. W.,, C. M. Leung,, E. T. Houang,, K. C. Ng,, C. B. Leung,, H. Y. Leung,, and A. F. Cheng. 1999. Skin carriage of acinetobacters in Hong Kong. J. Clin. Microbiol. 37: 2962 2967.
41. Cisneros, J. M.,, M. J. Reyes,, J. Pachon,, B. Becerril,, F. J. Caballero,, J. L. Garcia-Garmendia,, C. Ortiz,, and A. R. Cobacho. 1996. Bacteremia due to Acinetobacter baumannii: epidemiology, clinical findings, and prognostic features. Clin. Infect. Dis. 22: 1026 1032.
42. Coenye, T.,, J. Goris,, T. Spilker,, P. Vandamme,, and J. J. LiPuma. 2002. Characterization of unusual bacteria isolated from respiratory secretions of cystic fibrosis patients and description of Inquilinus limosus gen. nov., sp. nov. J. Clin. Microbiol. 40: 2062 2069.
43. Cohen, M. F.,, X. Y. Han,, and M. Mazzola. 2004. Molecular and physiological comparison of Azospirillum spp. isolated from Rhizoctonia solani mycelia, wheat rhizosphere, and human skin wounds. Can. J. Microbiol. 50: 291 297.
44. Cruze, J. A.,, J. T. Singer,, and W. R. Finnerty. 1979. Conditions for quantitative transformation in Acinetobacter calcoaceticus. Curr. Microbiol. 3: 129 132.
45. Daley, D.,, S. Neville,, and K. Kociuba. 1997. Peritonitis associated with a CDC group EO-3 organism. J. Clin. Microbiol. 35: 3338 3339.
46. Dan, M.,, R. Gutman,, and A. Biro. 1992. Peritonitis caused by Pseudomonas putrefaciens in patients undergoing continuous ambulatory peritoneal dialysis. Clin. Infect. Dis. 14: 359 360.
47. Daneshvar, M. I.,, B. Hill,, D. G. Hollis,, C. W. Moss,, J. G. Jordan,, J. P. MacGregor,, F. Tenover,, and R. S. Weyant. 1998. CDC group O-3: phenotypic characteristics, fatty acid composition, isoprenoid quinone content, and in vitro antimicrobic susceptibilities of an unusual gram-negative bacterium isolated from clinical specimens. J. Clin. Microbiol. 36: 1674 1678.
48. Daneshvar, M. I.,, D. G. Hollis,, R. S. Weyant,, A. G. Steigerwalt,, A. M. Whitney,, M. P. Douglas,, J. P. Macgregor,, J. G. Jordan,, L. W. Mayer,, S. M. Rassouli,, W. Barchet,, C. Munro,, L. Shuttleworth,, and K. Bernard. 2003. Paracoccus yeeii sp. nov. (formerly CDC group EO-2), a novel bacterial species associated with human infection. J. Clin. Microbiol. 41: 1289 1294.
49. Das, K.,, S. Shah,, and M. H. Levi. 1997. Misleading Gram stain from a patient with Moraxella (Branhamella) catarrhalis bacteremia. Clin. Microbiol. Newsl. 19: 85 88.
50. Da Silva, G. J.,, L. Dijkshoorn,, T. van der Reijden,, B. van Strijen,, and A. Duarte. 2007. Identification of widespread, closely related Acinetobacter baumannii isolates in Portugal as a subgroup of European clone II. Clin. Microbiol. Infect. 13: 190 195.
51. Dauga, C.,, M. Gillis,, P. Vandamme,, E. Ageron,, F. Grimont,, K. Kersters,, C. de Mahenge,, Y. Peloux,, and P. A. D. Grimont. 1993. Balneatrix alpica gen. nov., sp. nov., a bacterium associated with pneumonia and meningitis in a spa therapy centre. Res. Microbiol. 144: 35 46.
52. Davis, K. A.,, K. A. Moran,, C. K. Mcallister,, and P. G. Gray. 2005. Multidrug-resistant Acinetobacter extremity infections in soldiers. Emerg. Infect. Dis. 11: 1218 1224.
53. De, I.,, K. V. I. Rolston,, and X. Y. Han. 2004. Clinical significance of Roseomonas species isolated from catheter and blood samples: analysis of 36 cases in patients with cancer. Clin. Infect. Dis. 38: 1579 1584.
54. De Baere, T.,, A. Muylaert,, E. Everaert,, G. Wauters,, G. Claeys,, G. Verschraegen,, and M. Vaneechoutte. 2002. Bacteremia due to Moraxella atlantae in a cancer patient. J. Clin. Microbiol. 40: 2693 2695.
55. De Beaufort, A. J.,, A. T. Bernards,, L. Dijkshoorn,, and C. P. van Boven. 1999. Acinetobacter junii causes life-threatening sepsis in preterm infants. Acta Paediatr. 88: 772 775.
56. Dijkshoorn, L.,, M. F. Michel,, and J. E. Degener. 1987. Cell envelope protein profiles of Acinetobacter calcoaceticus strains isolated in hospitals. J. Med. Microbiol. 23: 313 319.
57. Dijkshoorn, L.,, and A. Nemec,. 2008. The diversity of the genus Acinetobacter, p. 1 34. In U. Gerischer (ed.), Acinetobacter Molecular Microbiology. Caister Academic Press, Norfolk, United Kingdom.
58. Dijkshoorn, L.,, A. Nemec,, and H. Seifert. 2007. An increasing threat in hospitals: multidrug-resistant Acinetobacter baumannii. Nat. Rev. Microbiol. 5: 939 951.
59. Dijkshoorn, L.,, E. van Aken,, L. Shunburne,, T. van der Reijden,, A. T. Bernards,, A. Nemec,, and K. J. Towner. 2005. Prevalence of Acinetobacter baumannii and other Acinetobacter spp. in faecal samples from non-hospitalised individuals. Clin. Microbiol. Infect. 11: 329 332.
60. Dijkshoorn, L.,, B. van Harsselaar,, I. Tjernberg,, P. J. Bouvet,, and M. Vaneechoutte. 1998. Evaluation of amplified ribosomal DNA restriction analysis for identification of Acinetobacter genomic species. Syst. Appl. Microbiol. 21: 33 39.
61. Dijkshoorn, L.,, W. Van Vianen,, J. E. Degener,, and M. F. Michel. 1987. Typing of Acinetobacter calcoaceticus strains isolated from hospital patients by cell envelope protein profiles. Epidemiol. Infect. 99: 659 667.
62. Dobrewski, R.,, E. Savov,, A. T. Bernards,, M. van den Barselaar,, P. Nordmann,, P. J. van den Broek,, and L. Dijkshoorn. 2006. Genotypic diversity and antibiotic susceptibility of Acinetobacter baumannii isolates in a Bulgarian hospital. Clin. Microbiol. Infect. 12: 1135 1137.
63. Dortet, L.,, P. Legrand,, C. J. Soussy,, and V. Cattoir. 2006. Bacterial identification, clinical significance, and antimicrobial susceptibilities of Acinetobacter ursingii and Acinetobacter schindleri, two frequently misidentified opportunistic pathogens. J. Clin. Microbiol. 44: 4471 4478.
64. Dunne, W. M., Jr.,, J. Tillman,, and J. C. Murray. 1993. Recovery of a strain of Agrobacterium radiobacter with a mucoid phenotype from an immunocompromised child with bacteremia. J. Clin. Microbiol. 31: 2541 2543.
65. Ecker, J. A.,, C. Massire,, T. A. Hall,, R. Ranken,, T. T. Pennella,, I. C. Agasino,, L. B. Blyn,, S. A. Hofstadler,, T. P. Endy,, P. T. Scott,, L. Lindler,, T. Hamilton,, C. Gaddy,, K. Snow,, M. Pe,, J. Fishbain,, D. Craft,, G. Deye,, S. Riddell,, E. Milstrey,, B. Petruccelli,, S. Brisse,, V. Harpin,, A. Schink,, D. J. Ecker,, R. Sampath,, and M. W. Eshoo. 2006. Identification of Acinetobacter species and genotyping of Acinetobacter baumannii by multilocus PCR and mass spectrometry. J. Clin. Microbiol. 44: 2921 2932.
66. Edmond, M. B.,, S. A. Riddler,, C. M. Baxter,, B. M. Wicklund,, and A. W. Pasculle. 1993. Agrobacterium radiobacter: a recently recognized opportunistic pathogen. Clin. Infect. Dis. 16: 388 391.
67. Ehrenstein, B.,, A. T. Bernards,, L. Dijkshoorn,, P. Gerner-Smidt,, K. J. Towner,, P. J. Bouvet,, F. D. Daschner,, and H. Grundmann. 1996. Acinetobacter species identification by using tRNA spacer fingerprinting. J. Clin. Microbiol. 34: 2414 2420.
68. Ellington, M. J.,, J. Kistler,, D. M. Livermore,, and N. Woodford. 2007. Multiplex PCR for rapid detection of genes encoding acquired metallo-beta-lactamases. J. Antimicrob. Chemother. 59: 321 322.
69. Ezzedine, H.,, M. Mourad,, C. Van Ossel,, C. Logghe,, J. P. Squifflet,, F. Renault,, G. Wauters,, J. Gigi,, L. Wilmotte,, and J. J. Haxha. 1994. An outbreak of Ochrobactrum anthropi bacteraemia in five organ transplant patients. J. Hosp. Infect. 27: 35 42.
70. Fass, R. J.,, and J. Barnishan. 1980. In vitro susceptibility of nonfermentative gram-negative bacilli other than Pseudomonas aeruginosa to 32 antimicrobial agents. Rev. Infect. Dis. 2: 841 853.
71. Fournier, P. E.,, D. Vallenet,, V. Barbe,, S. Audic,, H. Ogata,, L. Poirel,, H. Richet,, C. Robert,, S. Mangenot,, C. Abergel,, P. Nordmann,, J. Weissenbach,, D. Raoult,, and J. M. Claverie. 2006. Comparative genomics of multidrug resistance in Acinetobacter baumannii. PLoS Genet. 2: e7.
72. Fraser, S. L.,, and J. H. Jorgensen. 1997. Reappraisal of the antimicrobial susceptibilities of Chryseobacterium and Flavobacterium species and methods for reliable susceptibility testing. Antimicrob. Agents Chemother. 41: 2738 2741.
73. Freney, J.,, W. Hansen,, C. Ploton,, H. Meugnier,, S. Madier,, N. Bornstein,, and J. Fleurette. 1987. Septicemia caused by Sphingobacterium multivorum. J. Clin. Microbiol. 25: 1126 1128.
74. Gallego, V.,, M. T. Garcia,, and A. Ventosa. 2005. Methylobacterium isbiliense sp. nov., isolated from the drinking water system of Sevilla, Spain. Int. J. Syst. Evol. Microbiol. 55: 2333 2337.
75. Gerner-Smidt, P.,, I. Tjernberg,, and J. Ursing. 1991. Reliability of phenotypic tests for identification of Acinetobacter species. J. Clin. Microbiol. 29: 277 282.
76. Gini, G. A. 1990. Ocular infection caused by Psychrobacter immobilis acquired in the hospital. J. Clin. Microbiol. 28: 400 401.
77. Green, O.,, P. Murray,, and J. C. Gea-Banacloche. 2008. Sepsis caused by Elizabethkingia miricola successfully treated with tigecycline and levofloxacin. Diagn. Microbiol. Infect. Dis. 62: 430 432.
78. Green, P. N.,, I. J. Bousfield,, and D. Hood. 1988. Three new Methylobacterium species: M. rhodesianum sp. nov., M. zatmanii sp. nov., and M. fujisawaense sp. nov. Int. J. Syst. Bacteriol. 38: 124 127.
79. Greenberg, D. E.,, S. F. Porcella,, F. Stock,, A. Wong,, P. S. Conville,, P. R. Murray,, S. M. Holland,, and A. M. Zelazny. 2006. Granulibacter bethesdensis gen. nov., sp. nov., a distinctive pathogenic acetic acid bacterium in the family Acetobacteraceae. Int. J. Syst. Evol. Microbiol. 56: 2609 2616.
80. Grundmann, H. J.,, K. J. Towner,, L. Dijkshoorn,, P. Gerner-Smidt,, M. Maher,, H. Seifert,, and M. Vaneechoutte. 1997. Multicenter study using standardized protocols and reagents for evaluation of reproducibility of PCR-based fingerprinting of Acinetobacter spp. J. Clin. Microbiol. 35: 3071 3077.
81. Gundi, V. A.,, L. Dijkshoorn,, S. Burignat,, D. Raoult,, and S. B. La. 2009. Validation of partial rpoB gene sequence analysis for the identification of clinically important and emerging Acinetobacter species. Microbiology 155: 2333 2341.
82. Han, X. Y.,, A. S. Pham,, J. J. Tarrand,, K. V. Rolston,, L. O. Helsel,, and P. N. Levett. 2003. Bacteriologic characterization of 36 strains of Roseomonas species and proposal of Roseomonas mucosa sp. nov. and Roseomonas gilardii subsp. rosea subsp. nov. Am. J. Clin. Pathol. 120: 256 264.
83. Hawley, H. B.,, and D. W. Gump. 1973. Vancomycin therapy of bacterial meningitis. Am. J. Dis. Child. 126: 261 264.
84. Helsel, L. O.,, D. G. Hollis,, A. G. Steigerwalt,, R. E. Morey,, J. Jordan,, T. Aye,, J. Radosevic,, D. Jannat-Khah,, D. Thiry,, D. R. Lonsway,, J. B. Patel,, M. I. Daneshvar,, and P. N. Levett. 2007. Identification of “ Haematobacter,” a new genus of aerobic gram-negative rods isolated from clinical specimens, and reclassification of Rhodobacter massiliensis as “ Haematobacter massiliensis comb. nov.” J. Clin. Microbiol. 45: 1238 1243.
85. Hollis, D. G.,, M. I. Daneshvar,, C. W. Moss,, and C. N. Baker. 1995. Phenotypic characteristics, fatty acid composition, and isoprenoid quinone content of CDC group IIg bacteria. J. Clin. Microbiol. 33: 762 764.
86. Hollis, D. G.,, C. W. Moss,, M. I. Daneshvar,, L. Meadows,, J. Jordan,, and B. Hill. 1993. Characterization of Centers for Disease Control group NO-1, a fastidious, nonoxidative, gram-negative organism associated with dog and cat bites. J. Clin. Microbiol. 31: 746 748.
87. Holmes, B.,, M. Costas,, A. C. Wood,, R. J. Owen,, and D. D. Morgan. 1990. Differentiation of Achromobacter-like strains from human blood by DNA restriction endonuclease digest and ribosomal RNA gene probe patterns. Epidemiol. Infect. 105: 541 551.
88. Holmes, B.,, R. Lewis,, and A. Trevett. 1992. Septicaemia due to Achromobacter group B: a report of two cases. Med. Microbiol. Lett. 1: 177 184.
89. Holmes, B.,, R. J. Owen,, A. Evans,, H. Malnick,, and W. R. Willcox. 1977. Pseudomonas paucimobilis, a new species isolated from human clinical specimens, the hospital environment, and other sources. Int. J. Syst. Bacteriol. 27: 133 146.
90. Holmes, B.,, R. J. Owen,, and D. G. Hollis. 1982. Flavobacterium spiritivorum, a new species isolated from human clinical specimens. Int. J. Syst. Bacteriol. 32: 157 165.
91. Holmes, B.,, R. J. Owen,, and R. E. Weaver. 1981. Flavobacterium multivorum, a new species isolated from human clinical specimens and previously known as group IIK, biotype 2. Int. J. Syst. Bacteriol. 31: 21 34.
92. Holmes, B.,, C. A. Pinning,, and C. A. Dawson. 1986. A probability matrix for the identification of Gram-negative, aerobic, non-fermentative bacteria that grow on nutrient agar. J. Gen. Microbiol. 132: 1827 1842.
93. Holmes, B.,, M. Popoff,, M. Kiredjian,, and K. Kersters. 1988. Ochrobactrum anthropi gen. nov., sp. nov. from human clinical specimens and previously known as group Vd. Int. J. Syst. Bacteriol. 38: 406 416.
94. Holmes, B.,, P. Segers,, T. Coenye,, M. Vancanneyt,, and P. Vandamme. 2006. Pannonibacter phragmitetus, described from a Hungarian soda lake in 2003, had been recognized several decades earlier from human blood cultures as Achromobacter groups B and E. Int. J. Syst. Evol. Microbiol. 56: 2945 2948.
95. Holmes, B.,, J. J. S. Snell,, and S. P. Lapage. 1979. Flavobacterium odoratum: a species resistant to a wide range of antimicrobial agents. J. Clin. Pathol. 32: 73 77.
96. Holmes, B.,, A. G. Steigerwalt,, R. E. Weaver,, and D. J. Brenner. 1986. Weeksella virosa gen. nov., sp. nov. (formerly group IIf), found in human clinical specimens. Syst. Appl. Microbiol. 8: 185 190.
97. Holmes, B.,, A. G. Steigerwalt,, R. E. Weaver,, and D. J. Brenner. 1986. Weeksella zoohelcum sp. nov. (formerly group IIj), from human clinical specimens. Syst. Appl. Microbiol. 8: 191 196.
98. Holmes, B.,, R. E. Weaver,, A. G. Steigerwalt,, and D. J. Brenner. 1988. A taxonomic study of Flavobacterium spiritivorum and Sphingobacterium mizutae: proposal of Flavobacterium yabuuchiae sp. nov. and Flavobacterium mizutaii comb. nov. Int. J. Syst. Bacteriol. 38: 348 353.
99. Holt, H. M.,, P. Sogaard,, and B. Gahrn-Hansen. 1997. Ear infections with Shewanella alga: a bacteriologic, clinical and epidemiologic study of 67 cases. Clin. Microbiol. Infect. 3: 329 334.
100. Hornei, B.,, E. Luneberg,, H. Schmidt-Rotte,, M. Maab,, K. Weber,. F. Heits,, M. Frosch,, and W. Solbach. 1999. Systemic infection of an immunocompromised patient with Methylobacterium zatmanii. J. Clin. Microbiol. 37: 248 250.
101. Hsueh, P.-R.,, J.-C. Chang,, L.-J. Teng,, P.-C. Yang,, S.-W. Ho,, W.-C. Hsieh,, and K.-T. Luh. 1997. Comparison of Etest and agar dilution method for antimicrobial susceptibility testing of Flavobacterium isolates. J. Clin. Microbiol. 35: 1021 1023.
102. Hsueh, P.-R.,, L.-J. Teng,, S.-W. Ho,, W.-C. Hsieh,, and K.-T. Luh. 1996. Clinical and microbiological characteristics of Flavobacterium indologenes infections associated with indwelling devices. J. Clin. Microbiol. 34: 1908 1913.
103. Hsueh, P.-R.,, L.-J. Teng,, P.-C. Yang,, Y.-C. Chen,, H.-J. Pan,, S.-W. Ho,, and K.-T. Luh. 1998. Nosocomial infections caused by Sphingomonas paucimobilis: clinical features and microbiological characteristics. Clin. Infect. Dis. 26: 676 681.
104. Hsueh, P.-R.,, J.-J. Wu,, T.-R. Hsiue,, and W.-C. Hsieh. 1995. Bacteremic necrotizing fasciitis due to Flavobacterium odoratum. Clin. Infect. Dis. 21: 1337 1338.
105. Hulse, M.,, S. Johnson,, and P. Ferrieri. 1993. Agrobacterium infections in humans: experience at one hospital and review. Clin. Infect. Dis. 16: 112 117.
106. Hung, P. P.,, Y. H. Lin,, C. F. Lin,, M. F. Liu,, and Z. Y. Shi. 2008. Chryseobacterium meningosepticum infection: antibiotic susceptibility and risk factors for mortality. J. Microbiol. Immunol. Infect. 41: 137 144.
107. Hung, Y. T.,, Y. T. Lee,, L. J. Huang,, T. L. Chen,, K. W. Yu,, C. P. Fung,, W. L. Cho,, and C. Y. Liu. 2009. Clinical characteristics of patients with Acinetobacter junii infection. J. Microbiol. Immunol. Infect. 42: 47 53.
108. Huys, G.,, M. Cnockaert,, M. Vaneechoutte,, N. Woodford,, A. Nemec,, L. Dijkshoorn,, and J. Swings. 2005. Distribution of tetracycline resistance genes in genotypically related and unrelated multiresistant Acinetobacter baumannii strains from different European hospitals. Res. Microbiol. 156: 348 355.
109. Iacono, M.,, L. Villa,, D. Fortini,, R. Bordoni,, F. Imperi,, R. J. Bonnal,, T. Sicheritz-Ponten,, B. G. De,, P. Visca,, A. Cassone,, and A. Carattoli. 2008. Whole-genome pyrosequencing of an epidemic multidrug-resistant Acinetobacter baumannii strain belonging to the European clone II group. Antimicrob. Agents Chemother. 52: 2616 2625.
110. Iwata, M.,, K. Tateda,, T. Matsumoto,, N. Furuya,, S. Mizuiri,, and K. Yamaguchi. 1999. Primary Shewanella alga septicemia in a patient on hemodialysis. J. Clin. Microbiol. 37: 2104 2105.
111. Jannes, G.,, M. Vaneechoutte,, M. Lannoo,, M. Gillis,, M. Vancanneyt,, P. Vandamme,, G. Verschraegen,, H. van Heuverswyn,, and R. Rossau. 1993. Polyphasic taxonomy leading to the proposal of Moraxella canis sp. nov. for Moraxella catarrhalis-like strains. Int. J. Syst. Bacteriol. 43: 438 449.
112. Janssen, P.,, K. Maquelin,, R. Coopman,, I. Tjernberg,, P. Bouvet,, K. Kersters,, and L. Dijkshoorn. 1997. Discrimination of Acinetobacter genomic species by AFLP fingerprinting. Int. J. Syst. Bacteriol. 47: 1179 1187.
113. Jawad, A.,, P. M. Hawkey,, J. Heritage,, and A. M. Snelling. 1994. Description of Leeds Acinetobacter Medium, a new selective and differential medium for isolation of clinically important Acinetobacter spp., and comparison with Herellea agar and Holton’s agar. J. Clin. Microbiol. 32: 2353 2358.
114. Jenks, P. J.,, and E. J. Shaw. 1997. Recurrent septicaemia due to “ Achromobacter group B.” J. Infect. 34: 143 145.
115. Joly-Guillou, M. l. 2005. Clinical impact and pathogenicity of Acinetobacter. Clin. Microbiol. Infect. 11: 868 873.
116. Juni, E., 2005. Genus II. Acinetobacter Brisou and Prévot 1954, p. 425 437. In G. M. Garrity,, D. J. Brenner,, N. R. Krieg,, and J. T. Staley (ed.), Bergey’s Manual of Systematic Bacteriology, 2nd ed., vol. 2. Springer-Verlag, New York, NY.
117. Juni, E.,, and G. A. Heym. 1986. Psychrobacter immobilis gen. nov., sp. nov.: genospecies composed of gram-negative, aerobic, oxidase positive coccobacilli. Int. J. Syst. Bacteriol. 36: 388 391.
118. Kämpfer, P.,, A. Albrecht,, S. Buczolitz,, and H. J. Busse. 2002. Psychrobacter faecalis sp. nov., a new species from a bioaerosol originating from pigeon faeces. Syst. Appl. Microbiol. 25: 31 36.
119. Kämpfer, P.,, V. Avesani,, M. Janssens,, J. Charlier,, T. De Baere,, and M. Vaneechoutte. 2006. Description of Wautersiella falsenii gen. nov., sp. nov., to accommodate clinical isolates phenotypically resembling members of the genera Chryseobacterium and Empedobacter. Int. J. Syst. Evol. Microbiol. 56: 2323 2329.
120. Kämpfer, P.,, M. Vaneechoutte,, N. Lodders,, T. De Baere,, V. Avesani,, M. Janssens,, H.-J. Busse,, and G. Wauters. 2009. Description of Chryseobacterium anthropi sp. nov. to accommodate clinical isolates biochemically similar to Kaistella koreensis and Chryseobacterium haifense, proposal to reclassify Kaistella koreensis as Chryseobacterium koreense comb. nov. and emended description of the genus Chryseobacterium. Int. J. Syst. Evol. Microbiol. 59: 2421 2428.
121. Kappstein, I.,, H. Grundmann,, T. Hauer,, and C. Niemeyer. 2000. Aerators as a reservoir of Acinetobacter junii: an outbreak of bacteraemia in paediatric oncology patients. J. Hosp. Infect. 44: 27 30.
122. Karalus, R.,, and A. Campagnari. 2000. Moraxella catarrhalis: a review of an important human mucosal pathogen. Microbes Infect. 2: 547 559.
123. Katsura, K.,, H. Kawasaki,, W. Potacharoen,, S. Saono,, T. Seki,, Y. Yamada,, T. Uchimura,, and K. Komagata. 2001. Asaia siamensis sp. nov., an acetic acid bacterium in the α- Proteobacteria. Int. J. Syst. Evol. Microbiol. 51: 559 563.
124. Kaye, K. M.,, A. Macone,, and P. H. Kazanjian. 1992. Catheter infection caused by Methylobacterium in immunocompromised hosts: report of three cases and review of the literature. Clin. Infect. Dis. 14: 1010 1014.
125. Kern, W. V.,, M. Oethinger,, A. Kaufhold,, E. Rozdzinski,, and R. Marre. 1993. Ochrobactrum anthropi bacteremia: report of four cases and short review. Infection 21: 306 310.
126. Khashe, S.,, and J. M. Janda. 1998. Biochemical and pathogenic properties of Shewanella alga and Shewanella putrefaciens. J. Clin. Microbiol. 36: 783 787.
127. Kim, K. K.,, M. K. Kim,, J. H. Lim,, H. Y. Park,, and S.-T. Lee. 2005. Transfer of Chryseobacterium meningosepticum and Chryseobacterium miricola to Elizabethkingia gen. nov. as Elizabethkingia meningoseptica comb. nov. and Elizabethkingia miricola comb. nov. Int. J. Syst. Evol. Microbiol. 55: 1287 1293.
128. Ko, K. S.,, N. Y. Lee,, W. S. Oh,, J. H. Lee,, H. K. Ki,, K. R. Peck,, and J.-H. Song. 2005. Tepidimonas arfidensis sp. nov., a novel gram-negative and thermophilic bacterium isolated from the bone marrow of a patient with leukemia in Korea. Microbiol. Immunol. 49: 785 788.
129. Ko, W. C.,, N. Y. Lee,, S. C. Su,, L. Dijkshoorn,, M. Vaneechoutte,, L. R. Wang,, J. J. Yan,, and T. C. Chang. 2008. Oligonucleotide array-based identification of species in the Acinetobacter calcoaceticus- A. baumannii complex in isolates from blood cultures and antimicrobial susceptibility testing of the isolates. J. Clin. Microbiol. 46: 2052 2059.
130. Koh, T. H.,, L. H. Sng,, G. C. Wang,, L. Y. Hsu,, and Y. Zhao. 2007. IMP-4 and OXA beta-lactamases in Acinetobacter baumannii from Singapore. J. Antimicrob. Chemother. 59: 627 632.
131. Lambiase, A.,, M. Del Pezzo,, V. Raia,, A. Sepe,, P. Ferri,, and F. Rossano. 2007. Chryseobacterium respiratory tract infections in patients with cystic fibrosis. J. Infect. 55: 518 523.
132. Lee, C. H.,, W. C. Lin,, J. H. Chia,, L. H. Su,, C. C. Chien,, A. H. Mao,, and J. W. Liu. 2008. Community-acquired osteomyelitis caused by Chryseobacterium meningosepticum: case report and literature review. Diagn. Microbiol. Infect. Dis. 60: 89 93.
133. Lee, S. W.,, C. A. Tsai,, and B. J. Lee. 2008. Chryseobacterium meningosepticum sepsis complicated with retroperitoneal hematoma and pleural effusion in a diabetic patient. J. Chin. Med. Assoc. 71: 473 476.
134. Leung, W. S.,, C. M. Chu,, K. Y. Tsang,, F. H. Lo,, K. F. Lo,, and P. L. Ho. 2006. Fulminant community-acquired Acinetobacter baumannii pneumonia as a distinct clinical syndrome. Chest 129: 102 109.
135. Lin, P. Y.,, C. Chu,, L. H. Su,, C. T. Huang,, W. Y. Chang,, and C. H. Chiu. 2004. Clinical and microbiological analysis of bloodstream infections caused by Chryseobacterium meningosepticum in nonneonatal patients. J. Clin. Microbiol. 42: 3353 3355.
136. Lin, X. H.,, Y. H. Xu,, J. Cheng,, T. Li,, and Z. X. Wang. 2008. Heterogeneity of bla IND metallo-b-lactamase-producing Chryseobacterium indologenes isolates detected in Hefei, China. Int. J. Antimicrob. Agents 32: 398 400.
137. Lloyd-Puryear, M.,, D. Wallace,, T. Baldwin,, and D. G. Hollis. 1991. Meningitis caused by Psychrobacter immobilis in an infant. J. Clin. Microbiol. 29: 2041 2042.
138. López, F. C.,, F. F. de Luna,, M. C. Delgado,, I. I. de la Rosa,, S. Valdezate,, J. A. Nieto,, and M. Casal. 2008. Granulibacter bethesdensis isolated in a child patient with chronic granulomatous disease. J. Infect. 57: 275 277.
139. Loubinoux, J.,, L. Mihaila-Amrouche,, A. Le Fleche,, E. Pigne,, G. Huchon,, P. A. Grimont,, and A. Bouvet. 2003. Bacteremia caused by Acinetobacter ursingii. J. Clin. Microbiol. 41: 1337 1338.
140. MacDonell, M. T.,, and R. R. Colwell. 1985. Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella. Syst. Appl. Microbiol. 6: 171 182.
141. Mahmood, M. S.,, A. R. Sarwari,, M. A. Khan,, Z. Sophie,, E. Khan,, and S. Sami. 2000. Infective endocarditis and septic embolization with Ochrobactrum anthropi: case report and review of literature. J. Infect. 40: 287 290.
142. Marchaim, D.,, S. Navon-Venezia,, D. Schwartz,, J. Tarabeia,, I. Fefer,, M. J. Schwaber,, and Y. Carmeli. 2007. Surveillance cultures and duration of carriage of multi-drug-resistant Acinetobacter baumannii. J. Clin. Microbiol. 45: 1551 1555.
143. Marin, M. E.,, J. Marco Del Pont,, E. Dibar,, L. Fernandez Caniggia,, G. Greco,, Y. Flores,, and A. Ascione. 2001. Catheter-related bacteremia caused by Roseomonas gilardii in an immunocompromised patient. Int. J. Infect. Dis. 5: 170 171.
144. Mesnard, R.,, J. M. Sire,, P. Y. Donnio,, J. Y. Riou,, and J. Avril. 1992. Septic arthritis due to Oligella urethralis. Eur. J. Clin. Microbiol. Infect. Dis. 11: 195 196.
145. Moller, L. V. M.,, J. P. Arends,, H. J. M. Harmsen,, A. Talens,, P. Terpstra,, and M. J. H. Slooff. 1999. Ochrobactrum intermedium infection after liver transplantation. J. Clin. Microbiol. 37: 241 244.
146. Montejo, M.,, K. Aguirrebengoa,, J. Ugalde,, L. Lopez,, J. A. S. Nieto,, and J. L. Hernández. 2001. Bergeyella zoohelcum bacteremia after a dog bite. Clin. Infect. Dis. 33: 1608 1609.
147. Moore, J. E.,, M. Mccalmont,, J. Xu,, B. C. Millar,, and N. Heaney. 2002. Asaia sp., an unusual spoilage organism of fruit-flavored bottled water. Appl. Environ. Microbiol. 68: 4130 4131.
148. Morrison, A. J.,, and J. A. Shulman. 1986. Community-acquired bloodstream infection caused by Pseudomonas paucimobilis: case report and review of literature. J. Clin. Microbiol. 24: 853 855.
149. Nemec, A.,, T. De Baere,, I. Tjernberg,, M. Vaneechoutte,, T. J. K. van der Reijden,, and L. Dijkshoorn. 2001. Acinetobacter ursingii sp. nov. and Acinetobacter schindleri sp. nov., isolated from human clinical specimens. Int. J. Syst. Evol. Microbiol. 51: 1891 1899.
150. Nemec, A.,, L. Dijkshoorn,, I. Cleenwerck,, T. De Baere,, D. Janssens,, T. J. K. van der Reijden,, P. Jezek,, and M. Vaneechoutte. 2003. Acinetobacter parvus sp. nov., a small-colony-forming species isolated from human clinical specimens. Int. J. Syst. Evol. Microbiol. 53: 1563 1567.
151. Nemec, A.,, L. Dijkshoorn,, and T. van der Reijden. 2004. Long-term predominance of two pan-European clones among multi-resistant Acinetobacter baumannii strains in the Czech Republic. J. Med. Microbiol. 53: 147 153.
152. Nemec, A.,, L. Krizova,, M. Maixnerova,, L. Diancourt,, T. J. vanderReijden,, S. Brisse,, P. vandenBroek,, and L. Dijkshoorn. 2008. Emergence of carbapenem resistance in Acinetobacter baumannii in the Czech Republic is associated with the spread of multidrug-resistant strains of European clone II. J. Antimicrob. Chemother. 62: 484 489.
153. Nemec, A.,, M. Maixnerova,, T. J. vanderReijden,, P. J. vandenBroek,, and L. Dijkshoorn. 2007. Relationship between the AdeABC efflux system gene content, netilmicin susceptibility and multidrug resistance in a genotypically diverse collection of Acinetobacter baumannii strains. J. Antimicrob. Chemother. 60: 483 489.
154. Nemec, A.,, M. Musílek,, M. Maixnerová,, T. De Baere,, T. J. K. van der Reijden,, M. Vaneechoutte,, and L. Dijkshoorn. 2009. Acinetobacter beijerinckii sp. nov. and Acinetobacter gyllenbergii sp. nov., haemolytic organisms isolated from humans. Int. J. Syst. Evol. Microbiol. 59: 118 124.
155. Nemec, A.,, M. Musílek,, O. Šedo,, T. De Baere,, M. Maixnerová,, T. J. K. vanderReijden,, Z. Zdráhal,, M. Vaneechoutte,, and L. Dijkshoorn. 2010. Acinetobacter bereziniae sp. nov. and Acinetobacter guillouiae sp. nov., to accommodate Acinetobacter genomic species 10 and 11, respectively. Int. J. Syst. Evol. Microbiol. 60: 896 903.
156. Nemec, A.,, M. Musilek,, M. Vaneechoutte,, E. Falsen,, and L. Dijkshoorn. 2008. Lack of evidence for “ Acinetobacter septicus” as a species different from Acinetobacter ursingii? J. Clin. Microbiol. 46: 2826 2827.
157. Noell, F.,, M. F. Gorce,, C. Garde,, and C. Bizet. 1989. Isolation of Weeksella zoohelcum in septicaemia. Lancet ii: 332.
158. Nozue, H.,, T. Hayashi,, Y. Hashimoto,, T. Ezaki,, K. Hamasaki,, K. Ohwada,, and Y. Terawaki. 1992. Isolation and characterization of Shewanella alga from human clinical specimens and emendation of the description of S. alga Simidu et al., 1990, 335. Int. J. Syst. Bacteriol. 42: 628 634.
159. Nulens, E.,, B. Bussels,, A. Bols,, B. Gordts,, and H. W. Van Landuyt. 2001. Recurrent bacteremia by Chryseobacterium indologenes in an oncology patient with a totally implanted intravascular device. Clin. Microbiol. Infect. 7: 391 393.
160. O’Hara, C. M.,, and J. M. Miller. 2003. Evaluation of the Vitek 2 ID-GNB assay for identification of members of the family Enterobacteriaceae and other nonenteric gram-negative bacilli and comparison with the Vitek GNI+ card. J. Clin. Microbiol. 41: 2096 2101.
161. Oncul, O.,, O. Keskin,, H. V. Acar,, Y. Kucukardali,, R. Evrenkaya,, E. M. Atasoyu,, C. Top,, S. Nalbant,, S. Ozkan,, G. Emekdas,, S. Cavuslu,, M. H. Us,, A. Pahsa,, and M. Gokben. 2002. Hospital-acquired infections following the 1999 Marmara earthquake. J. Hosp. Infect. 51: 47 51.
162. Osterhout, G. J.,, V. H. Shull,, and J. D. Dick. 1991. Identification of clinical isolates of gram-negative nonfermentative bacteria by an automated cellular fatty acid identification system. J. Clin. Microbiol. 29: 1822 1830.
163. Patt, T. E.,, G. C. Cole,, and R. S. Hanson. 1976. Methylobacterium, a new genus of facultatively methylotrophic bacteria. Int. J. Syst. Bacteriol. 26: 226 229.
164. Peleg, A. Y.,, H. Seifert,, and D. L. Paterson. 2008. Acinetobacter baumannii: emergence of a successful pathogen. Clin. Microbiol. Rev. 21: 538 582.
165. Perera, S.,, and C. Palasuntheram. 2004. Chryseobacterium meningosepticum infections in a dialysis unit. Ceylon Med J. 49: 57 60.
166. Perilli, M.,, B. Caporale,, G. Celenza,, C. Pellegrini,, J. D. Docquier,, M. Mezzatesta,, G. M. Rossolini,, S. Stefani,, and G. Amicosante. 2007. Identification and characterization of a new metallo-β-lactamase, IND-5, from a clinical isolate of Chryseobacterium indologenes. Antimicrob. Agents Chemother. 51: 2988 2990.
167. Petti, C. A.,, C. R. Polage,, and P. Schreckenberger. 2005. Is misidentification of microorganisms by conventional methods a laboratory error? Preventing laboratory errors with 16S rRNA gene sequencing. J. Clin. Microbiol. 43: 6123 6125.
168. Pickett, M. J. 1989. Methods for identification of flavobacteria. J. Clin. Microbiol. 27: 2309 2315.
169. Pickett, M. J.,, A. von Graevenitz,, G. E. Pfyffer,, V. Pünter,, and M. Altwegg. 1996. Phenotypic features distinguishing Oligella urethralis from Moraxella osloensis. Med. Microbiol. Lett. 5: 265 270.
170. Pitulle, C.,, D. M. Citron,, B. Bochner,, R. Barbers,, and M. D. Appleman. 1999. Novel bacterium isolated from a lung transplant patient with cystic fibrosis. J. Clin. Microbiol. 37: 3851 3855.
171. Potron, A.,, L. Poirel,, J. Croizé,, V. Chanteperdrix,, and P. Nordmann. 2009. Genetic and biochemical characterization of the first extended-spectrum CARB-type beta-lactamase, RTG-4, from Acinetobacter baumannii. Antimicrob. Agents Chemother. 53: 3010 3016.
172. Prashanth, K.,, M. P. M. Ranga,, V. A. Rao,, and R. Kanungo. 2000. Corneal perforation due to Acinetobacter junii: a case report. Diagn. Microbiol. Infect. Dis. 37: 215 217.
173. Pugliese, A.,, B. Pacris,, P. E. Schoch,, and B. A. Cunha. 1993. Oligella urethralis urosepsis. Clin. Infect. Dis. 17: 1069 1070.
174. Purcell, B. K.,, and D. P. Dooley. 1999. Centers for Disease Control and Prevention group O1 bacterium-associated pneumonia complicated by bronchopulmonary fistula and bacteremia. Clin. Infect. Dis. 29: 945 946.
175. Reina, J.,, A. Bassa,, I. Llompart,, D. Portela,, and N. Borrell. 1991. Infections with Pseudomonas paucimobilis: report of four cases and review. Rev. Infect. Dis. 13: 1072 1076.
176. Reina, J.,, and N. Borrell. 1992. Leg abscess caused by Weeksella zoohelcum following a dog bite. Clin. Infect. Dis. 14: 1162 1163.
177. Reina, J.,, J. Gil,, F. Salva,, J. Gomez,, and P. Alomar. 1990. Microbiological characteristics of Weeksella virosa (formerly CDC group IIf) isolated from the human genitourinary tract. J. Clin. Microbiol. 28: 2357 2359.
178. Rice, E. W.,, D. J. Reasoner,, C. H. Johnson,, and L. A. Demaria. 2000. Monitoring for methylobacteria in water systems. J. Clin. Microbiol. 38: 4296 4297.
179. Rihs, J. D.,, D. J. Brenner,, R. E. Weaver,, A. G. Steigerwalt,, D. G. Hollis,, and V. L. Yu. 1993. Roseomonas, a new genus associated with bacteremia and other human infections. J. Clin. Microbiol. 31: 3275 3283.
180. Ringvold, A.,, E. Vik,, and L. S. Bevanger. 1985. Moraxella lacunata isolated from epidemic conjunctivitis among teenaged females. Acta Ophthalmol. (Copenhagen) 63: 427 431.
181. Rossau, R.,, K. Kersters,, E. Falsen,, E. Jantzen,, P. Segers,, A. Union,, L. Nehls,, and J. De Ley. 1987. Oligella, a new genus including Oligella urethralis comb. nov. (formerly Moraxella urethralis) and Oligella ureolytica sp. nov. (formerly CDC group IVe): relationship to Taylorella equigenitalis and related taxa. Int. J. Syst. Bacteriol. 37: 198 210.
182. Rossau, R.,, A. Van Landschoot,, M. Gillis,, and J. de Ley. 1991. Taxonomy of Moraxellaceae fam. nov., a new bacterial family to accommodate the genera Moraxella, Acinetobacter, and Psychrobacter and related organisms. Int. J. Syst. Bacteriol. 41: 310 319.
183. Saavedra, J.,, C. Garrido,, D. Folgueira,, M. J. Torres,, and J. T. Ramos. 1999. Ochrobactrum anthropi bacteremia associated with a catheter in an immunocompromised child and review of the pediatric literature. Pediatr. Infect. Dis. J. 18: 658 660.
184. Sanders, J. W.,, J. W. Martin,, M. Hooke,, and J. Hooke. 2000. Methylobacterium mesophilicum infection: case report and literature review of an unusual opportunistic pathogen. Clin. Infect. Dis. 30: 936 938.
185. Sawada, H.,, H. Ieki,, H. Oyaizu,, and S. Matsumoto. 1993. Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium radiobacter and Agrobacterium rhizogenes. Int. J. Syst. Bacteriol. 43: 694 702.
186. Seifert, H.,, l. Dijkshoorn,, P. Gerner-Smidt,, N. Pelzer,, I. Tjernberg,, and M. Vaneechoutte. 1997. Distribution of Acinetobacter species on human skin: comparison of phenotypic and genotypic identification methods. J. Clin. Microbiol. 35: 2819 2825.
187. Seifert, H.,, L. Dolzani,, R. Bressan,, T. van der Reijden,, B. van Strijen,, D. Stefanik,, H. Heersma,, and L. Dijkshoorn. 2005. Standardization and interlaboratory reproducibility assessment of pulsed-field gel electrophoresis-generated fingerprints of Acinetobacter baumannii. J. Clin. Microbiol. 43: 4328 4335.
188. Seifert, H.,, A. Strate,, and G. Pulverer. 1995. Nosocomial bacteremia due to Acinetobacter baumannii. Clinical features, epidemiology, and predictors of mortality. Medicine (Baltimore) 74: 340 349.
189. Seifert, H.,, A. Strate,, A. Schulze,, and G. Pulverer. 1993. Vascular catheter-related bloodstream infection due to Acinetobacter johnsonii (formerly Acinetobacter calcoaceticus var. lwoffi): report of 13 cases. Clin. Infect. Dis. 17: 632 636.
190. Seng, P.,, M. Drancourt,, F. Gouriet,, B. La Scola,, P. E. Fournier,, J. M. Rolain,, and D. Raoult. 2009. Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin. Infect. Dis. 49: 543 551.
191. Shah, S. S.,, A. Ruth,, and S. E. Coffin. 2000. Infection due to Moraxella osloensis: case report and review of the literature. Clin. Infect. Dis. 30: 179 181.
192. Sheridan, R. I.,, C. M. Ryan,, M. S. Pasternack,, J. M. Weber,, and R. G. Tompkins. 1993. Flavobacterial sepsis in massively burned pediatric patients. Clin. Infect. Dis. 17: 185 187.
193. Shokar, N. K.,, G. S. Shokar,, J. Islam,, and A. R. Cass. 2002. Roseomonas gilardii infection: case report and review. J. Clin. Microbiol. 40: 4789 4791.
194. Siegman-Igra, Y.,, S. Bar-Yosef,, A. Gorea,, and J. Avram. 1993. Nosocomial Acinetobacter meningitis secondary to invasive procedures: report of 25 cases and review. Clin. Infect. Dis. 17: 843 849.
195. Siegman-Igra, Y.,, D. Schwartz,, G. Soferman,, and N. Konforti. 1987. Flavobacterium group IIb bacteremia: report of a case and review of Flavobacterium infections. Med. Microbiol. Immunol. 176: 103 111.
196. Snyder, R. W.,, J. Ruhe,, S. Kobrin,, A. Wasserstein,, C. Doline,, I. Nachamkin,, and J. H. Lipschutz. 2004. Asaia bogorensis peritonitis identified by 16S ribosomal RNA sequence analysis in a patient receiving peritoneal dialysis. Am. J. Kidney Dis. 44: E15 E17.
197. Spangler, S. K.,, M. A. Visalli,, M. R. Jacobs,, and P. C. Appelbaum. 1996. Susceptibilities of non- Pseudomonas aeruginosa gram-negative nonfermentative rods to ciprofloxacin, ofloxacin, levofloxacin, D-ofloxacin, sparfloxacin, ceftazidime, piperacillin, piperacillin-tazobactam, trimethoprim- sulfamethoxazole, and imipenem. Antimicrob. Agents Chemother. 40: 772 775.
198. Speeleveld, E.,, J.-M. Fosspre,, B. Gordts,, and H. W. L Anduyt. 1994. Comparison of three rapid methods, tributyrine, 4-methylumbelliferyl butyrate, and indoxyl acetate, for rapid identification of Moraxella catarrhalis. J. Clin. Microbiol. 32: 1362 1363.
199. Steyn, P. L.,, P. Segers,, M. Vancanneyt,, P. Sandra,, K. Kersters,, and J. J. Joubert. 1998. Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov. Int. J. Syst. Bacteriol. 48: 165 177.
200. Struthers, M.,, J. Wong,, and J. M. Janda. 1996. An initial appraisal of the clinical significance of Roseomonas species associated with human infections. Clin. Infect. Dis. 23: 729 733.
201. Su, S. C.,, M. Vaneechoutte,, L. Dijkshoorn,, Y. F. Wei,, Y. L. Chen,, and T. C. Chang. 2009. Identification of nonfermenting Gram-negative bacteria of clinical importance by an oligonucleotide array. J. Med. Microbiol. 58: 596 605.
202. Subudhi, C. P. K.,, A. Adedeji,, M. E. Kaufmann,, G. S. Lucas,, and J. R. Kerr. 2001. Fatal Roseomonas gilardii bacteremia in a patient with refractory blast crisis of chronic myeloid leukemia. Clin. Microbiol. Infect. 7: 573 575.
203. Swenson, J. M.,, G. E. Killgore,, and F. C. Tenover. 2004. Antimicrobial susceptibility testing of Acinetobacter spp. by NCCLS broth microdilution and disk diffusion methods. J. Clin. Microbiol. 42: 5102 5108.
204. Takeuchi, M.,, K. Hamana,, and A. Hiraishi. 2001. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int. J. Syst. Evol. Microbiol. 51: 1405 1417.
205. Takeuchi, M.,, and A. Yokota. 1992. Proposals of Sphingobacterium faecium sp. nov., Sphingobacterium piscium sp. no v., Sphingobacterium heparinum comb, nov., Sphingobacterium thalpophilum comb. nov. and two genospecies of the genus Sphingobacterium, and synonymy of Flavobacterium yabuuchiae and Sphingobacterium spiritivorum. J. Gen. Appl. Microbiol. 38: 465 482.
206. Tjernberg, I.,, and J. Ursing. 1989. Clinical strains of Acinetobacter classified by DNA-DNA hybridization. APMIS 97: 595 605.
207. Tuon, F. F.,, L. Campos,, and D. de Almeida. 2007. Chryseobacterium meningosepticum as a cause of cellulitis and sepsis in an immunocompetent patient. J. Med. Microbiol. 56: 1116 1117.
208. Turton, J. F.,, S. N. Gabriel,, C. Valderrey,, M. E. Kaufmann,, and T. L. Pitt. 2007. Use of sequence-based typing and multiplex PCR to identify clonal lineages of outbreak strains of Acinetobacter baumannii. Clin. Microbiol. Infect. 13: 807 815.
209. Turton, J. F.,, J. Matos,, M. E. Kaufmann,, and T. L. Pitt. 2009. Variable number tandem repeat loci providing discrimination within widespread genotypes of Acinetobacter baumannii. Eur.J. Clin. Microbiol. Infect. Dis. 28: 499 507.
210. Turton, J. F.,, J. Shah,, C. Ozongwu,, and R. Pike. 2010. Incidence of Acinetobacter species other than A. baumannii among clinical isolates of Acinetobacter: evidence for emerging species. J. Clin. Microbiol. 48: 1445 1449.
211. Turton, J. R.,, M. E. Ward,, N. Woodford,, M. E. Kaufmann,, R. Pike,, D. M. Livermore,, and T. L. Pitt. 2006. The role of ISAbal in expression of OXA carbapenemase genes in Acinetobacter baumannii. FEMS Microbiol. Lett. 258: 72 77.
212. Turton, J. R.,, N. Woodford,, J. Glover,, S. Yarde,, M. E. Kaufmann,, and T. L. Pitt. 2006. Identification of Acinetobacter baumannii by detection of the MtfoxA-51-like carbapenemase gene intrinsic to this species. J. Clin. Microbiol. 44: 2974 2976.
213. Urakami, T.,, H. Araki,, K.-I. Suzuki,, and K. Komagata. 1993. Further studies of the genus Methylobacterium and description of Methylobacterium aminovorans sp. nov. Int. J. Syst. Bacteriol. 43: 504 513.
214. Ursing, J.,, and B. Bruun. 1991. Genotypic heterogeneity of Flavobacterium group lib and Flavobacterium breve, demonstrated by DNA-DNA hybridization. APMIS 99: 780 786.
215. Vancanneyt, M.,, P. Segers,, U. Torck,, B. Hoste,, J.-F. Bernardet,, P. Vandamme,, and K. Kersters. 1996. Reclassification of Flavobacterium odoratum (Stutzer 1929) strains to a new genus, Myroides, as Myroides odoratus comb. nov. and Myroides odoratimimus sp. nov. Int. J. Syst. Bacteriol. 46: 926 932.
216. Vandamme, P.,, J. F. Bernardet,, P. Segers,, K. Kersters,, and B. Holmes. 1994. New perspectives in the classification of the flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int. J. Syst. Bacteriol. 44: 827 831.
217. Vandamme, P.,, M. Gillis,, M. Vancanneyt,, B. Hoste,, K. Kersters,, and E. Falsen. 1993. Moraxella lincolnii sp. nov., isolated from the human respiratory tract, and reevaluation of the taxonomic position of Moraxella osloensis. Int. J. Syst. Bacteriol. 43: 474 481.
218. Vandamme, P.,, B. Holmes,, H. Bercovier,, and T. Coenye. 2006. Classification of Centers for Disease Control Group Eugonic Fermenter (EF)-4a and EF-4b as Neisseria animaloris sp. nov. and Neisseria zoodegmatis sp. nov., respectively. Int. J. Syst. Evol. Microbiol. 56: 1801 1805.
219. van denBroek, P. J.,, J. Arends,, A. T. Bernards,, E. De Brauwer,, E. M. Mascini,, T. J. van der Reijden,, L. Spanjaard,, E. A. Thewessen,, A. van der Zee,, J. H. van Zeijl,, and L. Dijkshoorn. 2006. Epidemiology of multiple Acinetobacter outbreaks in The Netherlands during the period 1999-2001. Clin. Microbiol. Infect. 12: 837 843.
220. van den Broek, P. J.,, T. J. K. van der Reijden,, E. van Strijen,, A. V. Helmig-Schurter,, A. T. Bernards,, and L. Dijkshoorn. 2009. Endemic and epidemic Acinetobacter species in a university hospital: an 8-year survey. J. Clin. Microbiol. 47: 3593 3599.
221. van Dessel, H.,, L. Dijkshoorn,, T. van der Reijden,, N. Bakker,, A. Paauw,, P. van den Broek,, J. Verhoef,, and S. Brisse. 2004. Identification of a new geographically widespread multiresistant Acinetobacter baumannii clone from European hospitals. Res. Microbiol. 155: 105 112.
222. vanDessel, H.,, T.E. Kamp-Hopmans,, A. C. Fluit,, S. Brisse,, A. M. de Smet,, L. Dijkshoorn,, A. Troelstra,, J. Verhoef,, and E. M. Mascini. 2002. Outbreak of a susceptible strain of Acinetobacter species 13 (sensu Tjernberg and Ursing) in an adult neurosurgical intensive care unit. J. Hosp. Infect. 51: 89 95.
223. Vaneechoutte, M.,, G. Claeys,, S. Steyaert,, T. De Baere,, R. Peleman,, and G. Verschraegen. 2000. Isolation of Moraxella canis from an ulcerated metastatic lymph node. J. Clin. Microbiol. 38: 3870 3871.
224. Vaneechoutte, M.,, and T. De Baere,. 2008. Taxonomy of the genus Acinetobacter, based on 16S ribosomal RNA gene sequences, p. 35 60. In U. Gerischer (ed.), Acinetobacter Molecular Microbiology. Caister Academic Press, Norfolk, United Kingdom.
225. Vaneechoutte, M.,, T. De Baere,, A. Nemec,, T. J. K. van der Reijden,, and L. Dijkshoorn. 2008. Reclassification of Acinetobacter grimontii Carr et al. 2003 as a later synonym of Acinetobacter jurdi Bouvet and Grimont 1986. Int. J. Syst. Evol. Microbiol. 58: 937 940.
226. Vaneechoutte, M.,, L. A. Devriese,,