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Chapter 9 : Regulation of NAD(P) Metabolism in

Author: Julianne House Grose1
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Affiliations: 1: Department of Microbiology and Molecular Biology, BrighamYoung University, Provo, UT 84602
Content Type: Monograph
Publication Year: 2011

Category: History of Science; Microbial Genetics and Molecular Biology

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Abstract:

John Roth commonly refers to the biosynthesis and recycling of nicotinamide adenine dinucleotide (NAD) (and the related cofactor NADP) as the navel of the universe since they are required for hundreds of the fundamental, and thus highly conserved, biochemical reactions of life. In this chapter, the author reviews what is known about NAD biosynthesis in (including work done while he was a graduate student in the Roth lab). There are two enzymes known to directly control the NAD to NADP ratio; one is NAD kinase (which produces NADP from NAD), and the other is NADP phosphatase (which runs the opposing reaction forming NAD from NADP). As new NAD(P)-related genes are identified through genomic, genetic, and biochemical approaches, we can increase our understanding of the interplay between cellular regulation of NAD(P) levels and NAD(P)- dependent processes. The chapter ends with the current thoughts on approaches for identifying novel NAD(P)-associated pathways or genes.

Citation: House Grose J. 2011. Regulation of NAD(P) Metabolism in , p 75-86. In Maloy S, Hughes K, Casadesús J (ed), The Lure of Bacterial Genetics. ASM Press, Washington, DC. doi: 10.1128/9781555816810.ch9

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Regulation of NAD(P) Metabolism in Salmonella
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Citation: House Grose J. 2011. Regulation of NAD(P) Metabolism in , p 75-86. In Maloy S, Hughes K, Casadesús J (ed), The Lure of Bacterial Genetics. ASM Press, Washington, DC. doi: 10.1128/9781555816810.ch9
/content/10.1128/9781555816810.ch09.ch09fig01
FIGURE 1
NAD(P) biosynthetic pathway of serovar Typhimurium. The gene encoding each enzyme activity is indicated by solid lines if known or by dashed lines if unknown. Unknown activities include NMN deamidase, NADP phosphatase, NAD(P) pyrophosphatase, NAD glycohydrolase, NMN glycohydrolase, and pyridine transport proteins.
10.1128/9781555816810/f0076-01_thmb.gif
10.1128/9781555816810/f0076-01.gif
Image of FIGURE 1
FIGURE 1

NAD(P) biosynthetic pathway of serovar Typhimurium. The gene encoding each enzyme activity is indicated by solid lines if known or by dashed lines if unknown. Unknown activities include NMN deamidase, NADP phosphatase, NAD(P) pyrophosphatase, NAD glycohydrolase, NMN glycohydrolase, and pyridine transport proteins.

Citation: House Grose J. 2011. Regulation of NAD(P) Metabolism in , p 75-86. In Maloy S, Hughes K, Casadesús J (ed), The Lure of Bacterial Genetics. ASM Press, Washington, DC. doi: 10.1128/9781555816810.ch9
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FIGURE 2
The NAD(P) biosynthetic pathway is feedback regulated by NAD and NADPH. The NAD(P) biosynthetic enzymes affected by feedback inhibition (A). The activities regulated by NadR are indicated in bold. The and genes are transcriptionally repressed by NadR when NAD levels are low, while the NmR kinase activity of NadR is enzymatically inhibited by NAD. In addition, NAD kinase is potently inhibited by in vivo levels of NADPH. A schematic diagram of the regulation of NadR by NAD (B). NadR acts as a transcriptional repressor when NAD levels are high but acts as a NmR kinase when NAD levels are low.
10.1128/9781555816810/f0079-01_thmb.gif
10.1128/9781555816810/f0079-01.gif
Image of FIGURE 2
FIGURE 2

The NAD(P) biosynthetic pathway is feedback regulated by NAD and NADPH. The NAD(P) biosynthetic enzymes affected by feedback inhibition (A). The activities regulated by NadR are indicated in bold. The and genes are transcriptionally repressed by NadR when NAD levels are low, while the NmR kinase activity of NadR is enzymatically inhibited by NAD. In addition, NAD kinase is potently inhibited by in vivo levels of NADPH. A schematic diagram of the regulation of NadR by NAD (B). NadR acts as a transcriptional repressor when NAD levels are high but acts as a NmR kinase when NAD levels are low.

Citation: House Grose J. 2011. Regulation of NAD(P) Metabolism in , p 75-86. In Maloy S, Hughes K, Casadesús J (ed), The Lure of Bacterial Genetics. ASM Press, Washington, DC. doi: 10.1128/9781555816810.ch9
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FIGURE 3
NadK is essential as shown by segregation of a duplication containing both wild-type and (swap) alleles (A). Colonies of a strain with a duplication spanning the region growing on rich medium with X-gal, in the presence and absence of chloramphenicol (B). When chloramphenicol is present, duplication segregation is lethal due to the requirement for .
10.1128/9781555816810/f0081-01_thmb.gif
10.1128/9781555816810/f0081-01.gif
Image of FIGURE 3
FIGURE 3

NadK is essential as shown by segregation of a duplication containing both wild-type and (swap) alleles (A). Colonies of a strain with a duplication spanning the region growing on rich medium with X-gal, in the presence and absence of chloramphenicol (B). When chloramphenicol is present, duplication segregation is lethal due to the requirement for .

Citation: House Grose J. 2011. Regulation of NAD(P) Metabolism in , p 75-86. In Maloy S, Hughes K, Casadesús J (ed), The Lure of Bacterial Genetics. ASM Press, Washington, DC. doi: 10.1128/9781555816810.ch9
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FIGURE 4
Conserved genomic clusters harboring NAD(P) biosynthetic genes. The genomic clustering of NAD(P) biosynthetic genes with other NAD(P) biosynthetic genes (A), with (B), and with and (C) in phylogenetically diverse bacterial genomes.
10.1128/9781555816810/f0083-01_thmb.gif
10.1128/9781555816810/f0083-01.gif
Image of FIGURE 4
FIGURE 4

Conserved genomic clusters harboring NAD(P) biosynthetic genes. The genomic clustering of NAD(P) biosynthetic genes with other NAD(P) biosynthetic genes (A), with (B), and with and (C) in phylogenetically diverse bacterial genomes.

Citation: House Grose J. 2011. Regulation of NAD(P) Metabolism in , p 75-86. In Maloy S, Hughes K, Casadesús J (ed), The Lure of Bacterial Genetics. ASM Press, Washington, DC. doi: 10.1128/9781555816810.ch9
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