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Chapter 10 : Genomics of and Other Members of the Genus

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Genomics of and Other Members of the Genus , Page 1 of 2

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Abstract:

Analyses of over 400 strains suggested that populations adapted to different niches exist. This study identified one 1/2a strain that was dominant among the strains collected from the food-processing plants. It is clear that the patterns and markers identified by these different genomic techniques in strains are an invaluable basis for developing powerful tools for rapidly tracing listeriosis outbreaks and for conducting effective surveillance of food-processing environments. The ongoing sequencing projects aimed at determining the complete genome sequence of one representative of each species of the genus by the Institut Pasteur and the German PathoGenomiK network. The determination of the complete genome sequence of an additional 18 strains of by the Broad Institute can be the driving force for understanding the function of the many factors encoded by the genome, whether involved in virulence or not, and to understanding strain-specific differences in niche adaptation and virulence. The sequencing of hundreds of genomes and communities, like those resident in food production environments, will allow us to move from population genetics to population genomics.

Citation: Buchrieser C, Glaser P. 2011. Genomics of and Other Members of the Genus , p 125-145. In Fratamico P, Liu Y, Kathariou S (ed), Genomes of Foodborne and Waterborne Pathogens. ASM Press, Washington, DC. doi: 10.1128/9781555816902.ch10

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Figure 1

Phylogenetic tree of the genus This tree is based on the concatenated nucleic acid sequences of 16S and 23S rRNA, The bar indicates 10% estimated sequence divergence. Reproduced with permission from reference .

Citation: Buchrieser C, Glaser P. 2011. Genomics of and Other Members of the Genus , p 125-145. In Fratamico P, Liu Y, Kathariou S (ed), Genomes of Foodborne and Waterborne Pathogens. ASM Press, Washington, DC. doi: 10.1128/9781555816902.ch10
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Image of Figure 2
Figure 2

Schematic representation of the infection cycle of The successive steps are: entry ( ), lysis of the vacuole ( ), intracellular replication ( ), intracellular movements ( ), cell-to-cell spread ( ), formation and lysis ( ) of the two-membrane vacuole. Virulence factors involved at the different steps are indicated. Adapted from reference .

Citation: Buchrieser C, Glaser P. 2011. Genomics of and Other Members of the Genus , p 125-145. In Fratamico P, Liu Y, Kathariou S (ed), Genomes of Foodborne and Waterborne Pathogens. ASM Press, Washington, DC. doi: 10.1128/9781555816902.ch10
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Image of Figure 3
Figure 3

Comparison of the virulence gene cluster in all sequenced genomes. Schematic presentation of the virulence gene cluster in and its comparison to the orthologous region in Orthologous genes among the different spp. are depicted in the same color or shading pattern. The gene cluster is flanked by the housekeeping genes (black arrows) and in all six species of and are also present in Known virulence genes or potentially regulated by PrfA are depicted in medium gray. Freely adapted from references , and .

Citation: Buchrieser C, Glaser P. 2011. Genomics of and Other Members of the Genus , p 125-145. In Fratamico P, Liu Y, Kathariou S (ed), Genomes of Foodborne and Waterborne Pathogens. ASM Press, Washington, DC. doi: 10.1128/9781555816902.ch10
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Image of Figure 4
Figure 4

Comparison of the locus and the flanking regions in and and its hypothetical ancestral organization. EGD, F6854, CLIP80459, F2365, H7858: strain designations. Clip 11262: strain designation. Orthologous genes are depicted in the same color. Dark gray, locus; dotted lines indicate specific regions with respect to the other genomes: gene names of EGDe; gene names of CLIP80459; gene names of F2365; gene names of H7858; gene names of CLIP11262. Asterisks indicate pseudogenes. Reproduced with permission from reference .

Citation: Buchrieser C, Glaser P. 2011. Genomics of and Other Members of the Genus , p 125-145. In Fratamico P, Liu Y, Kathariou S (ed), Genomes of Foodborne and Waterborne Pathogens. ASM Press, Washington, DC. doi: 10.1128/9781555816902.ch10
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Tables

Generic image for table
Table 1

General features of published genome sequences

Citation: Buchrieser C, Glaser P. 2011. Genomics of and Other Members of the Genus , p 125-145. In Fratamico P, Liu Y, Kathariou S (ed), Genomes of Foodborne and Waterborne Pathogens. ASM Press, Washington, DC. doi: 10.1128/9781555816902.ch10
Generic image for table
Table 2

General features and sequencing status of 18 L. draft genomes sequenced by the Broad Institute

Citation: Buchrieser C, Glaser P. 2011. Genomics of and Other Members of the Genus , p 125-145. In Fratamico P, Liu Y, Kathariou S (ed), Genomes of Foodborne and Waterborne Pathogens. ASM Press, Washington, DC. doi: 10.1128/9781555816902.ch10
Generic image for table
Table 3

lineage specific marker genes

Citation: Buchrieser C, Glaser P. 2011. Genomics of and Other Members of the Genus , p 125-145. In Fratamico P, Liu Y, Kathariou S (ed), Genomes of Foodborne and Waterborne Pathogens. ASM Press, Washington, DC. doi: 10.1128/9781555816902.ch10

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