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Chapter 5 : General Characteristics of Cold-Adapted Microorganisms

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Abstract:

Although interest in microbes inhabiting low-temperature environments has increased in recent years, significant gaps remain in understanding what makes certain microorganisms cold adapted. Interest in the structural, biochemical, and physiological properties of psychrophilic microorganisms has motivated investigations to characterize the adaptations that maintain enzymatic reaction rates, macromolecular stability, and homeostasis at cold temperature. This chapter provides an overview on the state of knowledge about adaptations that allow certain bacteria and archaea to persist in the coldest regions of the biosphere. In general, the proteins of psychrophilic microorganisms must maintain flexibility to perform catalysis at low temperatures, whereas thermophilic proteins are rigid to protect them from thermal denaturation. Importantly, adaptations that enhance protein flexibility reduce the activation energy needed for the formation of the enzyme-substrate complex, resulting in enhanced catalytic activity at low temperature. The chapter discusses many of the most common and generally understood biochemical and physiological adaptations that appear unique to the psychrophilic lifestyle. Psychrophilic microorganisms use a range of strategies to persist at low temperatures, including possessing catalytically efficient enzymes, synthesizing specialized lipids that increase membrane flexibility, and producing proteins that affect freezing and ice structure. Coupled with technological advances in high-throughput DNA sequencing and proteomics, one can expect that information on cold-adapted bacteria and archaea will increase in the future.

Citation: Doyle S, Dieser M, Broemsen E, Christner B. 2012. General Characteristics of Cold-Adapted Microorganisms, p 103-125. In Miller R, Whyte L (ed), Polar Microbiology: Life in a Deep Freeze. ASM Press, Washington, DC. doi: 10.1128/9781555817183.ch5

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Bacterial Proteins
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Image of FIGURE 1
FIGURE 1

The effect of temperature on the growth rate of K5 in liquid culture. values for bacterial growth increase with decreasing temperature ( ). A of 2.3, similar to published values for complex communities ( ), is obtained when using the high- and low-temperature data points. (Generation times are based on unpublished data [P. Amato] and the data for growth at −10°C are from .)

Citation: Doyle S, Dieser M, Broemsen E, Christner B. 2012. General Characteristics of Cold-Adapted Microorganisms, p 103-125. In Miller R, Whyte L (ed), Polar Microbiology: Life in a Deep Freeze. ASM Press, Washington, DC. doi: 10.1128/9781555817183.ch5
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Image of FIGURE 2
FIGURE 2

Thermodependence of enzyme activity. α-Amylase activity for (•) and (°), illustrating the greater of the psychrophilic organism's enzyme at low temperature. (Adapted from )

Citation: Doyle S, Dieser M, Broemsen E, Christner B. 2012. General Characteristics of Cold-Adapted Microorganisms, p 103-125. In Miller R, Whyte L (ed), Polar Microbiology: Life in a Deep Freeze. ASM Press, Washington, DC. doi: 10.1128/9781555817183.ch5
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Image of FIGURE 3
FIGURE 3

Bright field image of polycrystalline ice. The image shows narrow, intergranular veins and triple junctions formed between ice crystals. cells that were frozen in LB broth at −20°C on a cryostage were excluded into the vein network during ice formation. The width of the image is 230 µm.

Citation: Doyle S, Dieser M, Broemsen E, Christner B. 2012. General Characteristics of Cold-Adapted Microorganisms, p 103-125. In Miller R, Whyte L (ed), Polar Microbiology: Life in a Deep Freeze. ASM Press, Washington, DC. doi: 10.1128/9781555817183.ch5
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Image of FIGURE 4
FIGURE 4

(A) Bulk percentage estimates of unfrozen water in various icy substrates. The inclusion of 1 M NaCl is for comparison. (B) Predicted ionic strength and a of the unfrozen water. (Water chemistry data: Seawater, ; Antarctic Permafrost, ; Antarctic Glacial Ice, S. Montross [unpublished data]. Calculations were performed on dissolved major ions using FREZCHEM [v. 11.2; ].)

Citation: Doyle S, Dieser M, Broemsen E, Christner B. 2012. General Characteristics of Cold-Adapted Microorganisms, p 103-125. In Miller R, Whyte L (ed), Polar Microbiology: Life in a Deep Freeze. ASM Press, Washington, DC. doi: 10.1128/9781555817183.ch5
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Tables

Generic image for table
TABLE 1

Examples of molecular adaptations in genes, proteins, and enzymes documented in psychrophilic prokaryotes

Citation: Doyle S, Dieser M, Broemsen E, Christner B. 2012. General Characteristics of Cold-Adapted Microorganisms, p 103-125. In Miller R, Whyte L (ed), Polar Microbiology: Life in a Deep Freeze. ASM Press, Washington, DC. doi: 10.1128/9781555817183.ch5
Generic image for table
TABLE 2

Reports documenting evidence for subzero metabolic activity

CF-IRMS, continuous flow isotope ratio monitoring mass spectrometry; CTC, 5-cyano-2,3-ditolyl tetrazolium chloride.

Citation: Doyle S, Dieser M, Broemsen E, Christner B. 2012. General Characteristics of Cold-Adapted Microorganisms, p 103-125. In Miller R, Whyte L (ed), Polar Microbiology: Life in a Deep Freeze. ASM Press, Washington, DC. doi: 10.1128/9781555817183.ch5

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