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REFERENCES

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1. Bendich, A. J. 2001. The form of chromosomal DNA molecules in bacterial cells. Biochimie 83: 177 186.
2. Blattner, F. R.,, G. Plunkett,, C. A. Bloch,, N. T. Perna,, V. Burland,, M. Riley,, J. Collado-Vides,, J. D. Glasner,, C. K. Rode,, G. F. Mayhew,, J. Gregor,, N. W. Davis,, H. A. Kirkpatrick,, M. A. Goeden,, D. J. Rose,, B. Mau,, and Y. Shao. 1997. The complete genome sequence of Escherichia coli K-12. Science 277: 1453 1474.
3. Brewer, B. J., 1990. Replication and the transcriptional organization of the Escherichia coli chromosome, p. 61 84. In K. Drlica, and M. Riley (ed.), The Bacterial Chromosome. American Society for Microbiology, Washington, D.C.
4. Campbell, A. M. 1992. Chromosomal insertion sites for phages and plasmids. J. Bacteriol. 174: 7495 7499.
5. Campbell, A. M. 2002. Preferential orientation of natural lambdoid prophages and bacterial chromosome organization. Theor. Popul. Biol. 61: 503 507.
6. Colbert, T.,, A. F. Taylor,, and G. P. Smith. 1998. Genomics, Chi sites and codons: ‘islands of preferred DNA pairing’ are oceans of ORFs. Trends Genet. 14: 485 488.
7. Francino, M. P.,, and H. Ochman. 1997. Strand asymmetries in DNA evolution. Trends Genet. 13: 240 245.
8. French, S. 1992. Consequences of replication fork movement through transcription units in vivo. Science 258: 1362 1365.
9. Karlin, S.,, A. M. Campbell,, and J. Mrázek. 1998. Comparative DNA analysis across diverse genomes. Annu. Rev. Genet. 32: 186 226.
10. Lawrence, J. G.,, and H. Ochman. 1997. Amelioration of bacterial genomes: rates of change and exchange. J. Mol. Evol. 44: 383 397.
11. Liu, B.,, and B. M. Alberts. 1995. Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex. Science 267: 1131 1137.
12. Lobry, J. R. 1996. Asymmetric substitution patterns in the two DNA strands of bacteria. Mol. Biol. Evol. 13: 660 665.
13. VanBogelen, R. A.,, K. Z. Abshire,, A. Pertsemlidis,, R. L. Clark,, and F. C. Neidhardt,. 1996. Gene-protein database of Escherichia coli K-12, edition 6, p. 2067 2117. In F. C. Neidhardt,, R. Curtiss III,, J. L. Ingraham,, E. C. C. Lin,, K. B. Low,, B. Magasanik,, W. S. Reznikoff,, M. Riley,, M. Schaechter,, and H. E. Umbarger (ed.), Escherichia coli and Salmonella:Cellular and Molecular Biology, vol. 2. ASM Press, Washington D.C.
14. Yang, M. C.,, and R. Losick. 2001. Cytological evidence for association at the ends of the linear chromosome in Streptomyces coelicolor. J. Bacteriol. 183: 5180 5186.

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