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Section 8 : Vaccines, Susceptibility Testing, and Methods of Organism Identification

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Abstract:

Two important control measures for infectious diseases are vaccination to prevent infection and use of antimicrobial therapy to eradicate infections. This section provides information for both approaches. Tables 8.1 and 8.2 summarize immunization recommendations for pediatric and adult patients. These recommendations are published periodically in the and at the Centers for Disease Control and Prevention (CDC) website (hppt://www.cdc.gov/nip). The tables are a summary of the recommendations of the Advisory Committee on Immunization Practices (ACIP), the American Academy of Family Physicians (AAFP), the American College of Obstetricians and Gynecologists (ACOG), the American College of Physicians-American Society of Internal Medicine (ACP-ASIM), and the Infectious Diseases Society of America (IDSA).

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Tables

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Table 8.1

Recommended pediatric immunization schedule

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.2

Recommended adult immunization schedule

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.3

Clinical and Laboratory Standards Institute (CLSI) documents related to antimicrobial susceptibility testing from humans

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.4

Summary of CLSI antimicrobial susceptibility test methods for select bacteria, mycobacteria, and fungi

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.5

Routes of administration and drug class for select antimicrobial agents

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.6

Routes of administration and drug class for select antifungal agents

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.7

Routes of administration and drug class for select antiparasitic agents

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.8

Antibacterial agents for specific bacteria

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.9

Intrinsic resistance of selected Gram-negative bacteria

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.10

Intrinsic resistance of selected Gram positive bacteria

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.11

Important mechanisms of multidrug resistance in bacteria.

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.12

Organisms included in CLSI and EUCAST breakpoint tables

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.13

Guide to interpretive criteria for select organisms for commonly tested antimicrobials

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.14

Summary of MALDI-TOF MS identification of bacteria, mycobacteria, and fungi

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8
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Table 8.15

Gene sequencing targets for organism identification

Citation: Doern C. 2018. Vaccines, Susceptibility Testing, and Methods of Organism Identification, p 323-381. In Pocket Guide to Clinical Microbiology, Fourth Edition. ASM Press, Washington, DC. doi: 10.1128/9781683670070.ch8

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