1887

Bibliography

MyBook is a cheap paperback edition of the original book and will be sold at uniform, low price.
  • XML
    421.44 Kb
  • HTML
    346.61 Kb
You must be logged in to use this functionality
Loading full text...

Full text loading...

/deliver/fulltext/10.1128/9781555819880/bib1lev1sec1.html?itemId=/content/book/10.1128/9781555819880.bib1lev1sec1&mimeType=html&fmt=ahah
1. Ajantha GS, , Kulkarni RD. 2011. Cladophialophora bantiana, the neurotropic fungus—a mini review. J Clin Diagn Res 5 : 1301 1306.
2. Amaike S, , Keller NP . 2011. Aspergillus flavus. Annu Rev Phytopathol 49 : 107 133.[PubMed]
3. Anaissie EJ, , McGinnis MR, , Pfaller MA (ed). 2009. Clinical Mycology, 2nd ed. Churchill Livingstone, Elsevier, New York, NY.
4. Badali H, , Najafzadeh MJ, , van Esbroeck M, , van den Enden E, , Tarazooie B, , Meis JF, , de Hoog GS . 2010. The clinical spectrum of Exophiala jeanselmei, with a case report and in vitro antifungal susceptibility of the species. Med Mycol 48 : 318 327.[CrossRef]
5. Bader O, , Weig M, , Taverne-Ghadwal L, , Lugert R, , Gross U, , Kuhns M . 2011. Improved clinical laboratory identification of human pathogenic yeasts by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Microbiol Infect 17 : 1359 1365.[CrossRef]
6. Balajee SA, , Borman AM, , Brandt ME, , Cano J, , Cuenca-Estrella M, , Dannaoui E, , Guarro J, , Haase G, , Kibbler CC, , Meyer W, , O’Donnell K, , Petti CA, , Rodriguez-Tudela JL, , Sutton D, , Velegraki A, , Wickes BL . 2009. Sequence-based identification of Aspergillus, Fusarium, and Mucorales species in the clinical mycology laboratory: where are we and where should we go from here? J Clin Microbiol 47 : 877 884.[CrossRef]
7. Barker AP, , Horan JL, , Slechta ES, , Alexander BD, , Hanson KE . 2014. Complexities associated with the molecular and proteomic identification of Paecilomyces species in the clinical mycology laboratory. Med Mycol 52 : 537 545.[PubMed]
8. Barron GL. 1977. The Genera of Hyphomycetes from Soil. Robert E Krieger Publishing Co, Huntington, NY.
9. Barros MB, , de Almeida Paes R, , Schubach AO . 2011. Sporothrix schenckii and sporotrichosis. Clin Microbiol Rev 24 : 633 654.[CrossRef]
10. Begerow D, , Nilsson H, , Unterseher M, , Maier W . 2010. Current state and perspectives of fungal DNA barcoding and rapid identification procedures. Appl Microbiol Biotechnol 87 : 99 108.[CrossRef]
11. Bensch K, , Braun U, , Groenewald JZ, , Crous PW . 2012. The genus Cladosporium. Stud Mycol 72 : 1 401.[PubMed]
12. Bigliazzi C, , Poletti V, , Dell’Amore D, , Saragoni L, , Colby TV. 2004. Disseminated basidiobolomycosis in an immunocompetent woman. J Clin Microbiol 42 : 1367 1369.[PubMed]
13. Bizzini A, , Greub G . 2010. Matrix-assisted laser desorption ionization time-of-flight mass spectrometry, a revolution in clinical microbial identification. Clin Microbiol Infect 16 : 1614 1619.[CrossRef]
14. Borman AM, , Linton CJ, , Miles SJ, , Johnson EM . 2008. Molecular identification of pathogenic fungi. J Antimicrob Chemother 61( Suppl 1) : i7 i12.[CrossRef]
15. Borman AM, , Linton CJ, , Oliver D, , Palmer MD, , Szekely A, , Johnson EM . 2010. Rapid molecular identification of pathogenic yeasts by pyrosequencing analysis of 35 nucleotides of internal transcribed spacer 2. J Clin Microbiol 48 : 3648 3653.[CrossRef]
16. Brandt ME, , Lockhart SR . 2012. Recent taxonomic developments with Candida and other opportunistic yeasts. Curr Fungal Infect Rep 6 : 170 177.[CrossRef]
17. Brown-Elliott BA, , Brown JM, , Conville PS, , Wallace RJ Jr. 2006. Clinical and laboratory features of the Nocardia spp. based on current molecular taxonomy. Clin Microbiol Rev 19 : 259 282.[CrossRef]
18. Buchan BW, , Ledeboer NA . 2013. Advances in identification of clinical yeast isolates by use of matrix-assisted laser desorption ionization–time of flight mass spectrometry. J Clin Microbiol 51 : 1359 1366.[CrossRef]
19. Burns C, , Valentine J . 2016. Tinea imbricata. N Engl J Med 375 : 2272.[PubMed]
20. Castillo CG, , Kauffman CA, , Miceli MH . 2016. Blastomycosis. Infect Dis Clin North Am 30 : 247 264.[PubMed]
21. Chakrabarti A, , Bonifaz A, , Gutierrez-Galhardo MC, , Mochizuki T, , Li S . 2015. Global epidemiology of sporotrichosis. Med Mycol 53 : 3 14.[CrossRef]
22. Chamilos G, , Kontoyiannis DP. 2005. Voriconazole-resistant disseminated Paecilomyces variotii infection in a neutropenic patient with leukaemia on voriconazole prophylaxis. J Infect 51 : e225 e228.[CrossRef]
23. Chandler FW, , Watts JC. 1987. Pathologic Diagnosis of Fungal Infections. American Society of Clinical Pathology Press, Chicago, IL.
24. Charles MP, , Noyal MJ, , Easow JM, , Ravishankar M . 2011. Invasive pulmonary aspergillosis caused by Aspergillus versicolor in a patient on mechanical ventilation. Australas Med J 4 : 632 634.[PubMed]
25. Chen SC, , Sorrell TC, , Meyer W, . 2015. Aspergillus and Penicillium, p 2030 2056. In Jorgensen JH,, Pfaller MA,, Carroll KC,, Funke G,, Landry ML,, Richter SS,, Warnock DW (ed), Manual of Clinical Microbiology, 11th ed. ASM Press, Washington, DC.
26. Chouaki T, , Lavarde V, , Lachaud L, , Raccurt CP, , Hennequin C . 2002. Invasive infections due to Trichoderma species: report of 2 cases, findings of in vitro susceptibility testing, and review of the literature. Clin Infect Dis 35 : 1360 1367.[PubMed]
27. Clinical and Laboratory Standards Institute . 2008. Interpretive Criteria for Identification of Bacteria and Fungi by DNA Target Sequencing. CLSI document MM18-A. Clinical and Laboratory Standards Institute, Wayne, PA.
28. Cogliati M . 2013. Global molecular epidemiology of Cryptococcus neoformans and Cryptococcus gattii: an atlas of the molecular types. Scientifica (Cairo) 2013 : 675213.[PubMed]
29. Colombo AL, , Guimarães T, , Silva LR, , de Almeida Monfardini LP, , Cunha AK, , Rady P, , Alves T, , Rosas RC . 2007. Prospective observational study of candidemia in São Paulo, Brazil: incidence rate, epidemiology, and predictors of mortality. Infect Control Hosp Epidemiol 28 : 570 576.[PubMed]
30. Conen A, , Weisser M, , Hohler D, , Frei R, , Stern M . 2011. Hormographiella aspergillata: an emerging mould in acute leukaemia patients? Clin Microbiol Infect 17 : 273 277.[PubMed]
31. Connor DH, , Chandler FW, , Schwartz D, , Manz H, , Lack E. 1997. Pathology of Infectious Diseases. Appleton & Lange, Stamford, CT.
32. Conville PS, , Witebsky FG, . 2015. Nocardia, Rhodococcus, Gordonia, Actinomadura, Streptomyces, and other aerobic actinomycetes, p 504 535. In Jorgensen JH,, Pfaller MA,, Carroll KC,, Funke G,, Landry ML,, Richter SS,, Warnock DW (ed), Manual of Clinical Microbiology, 11th ed. ASM Press, Washington, DC.
33. Cooper CR Jr, , Haycocks NG . 2000. Penicillium marneffei: an insurgent species among the penicillia. J Eukaryot Microbiol 47 : 24 28.[PubMed]
34. Cristini A, , Garcia-Hermoso D, , Celard M, , Albrand G, , Lortholary O . 2010. Cerebral phaeohyphomycosis caused by Rhinocladiella mackenziei in a woman native to Afghanistan. J Clin Microbiol 48 : 3451 3454.[PubMed]
35. da Cunha KC, , Sutton DA, , Fothergill AW, , Cano J, , Gené J, , Madrid H, , De Hoog S, , Crous PW, , Guarro J . 2012. Diversity of Bipolaris species in clinical samples in the United States and their antifungal susceptibility profiles. J Clin Microbiol 50 : 4061 4066.[PubMed]
36. da Cunha KC, , Sutton DA, , Gené J, , Cano J, , Capilla J, , Madrid H, , Decock C, , Wiederhold NP, , Guarro J . 2014. Pithomyces species (Montagnulaceae) from clinical specimens: identification and antifungal susceptibility profiles. Med Mycol 52 : 748 757.[CrossRef]
37. D’Antonio D, , Romano F, , Pontieri E, , Fioritoni G, , Caracciolo C, , Bianchini S, , Olioso P, , Staniscia T, , Sferra R, , Boccia S, , Vetuschi A, , Federico G, , Gaudio E, , Carruba G . 2002. Catheter-related candidemia caused by Candida lipolytica in a patient receiving allogeneic bone marrow transplantation. J Clin Microbiol 40 : 1381 1386.[PubMed]
38. Datta K, , Bartlett KH, , Baer R, , Byrnes E, , Galanis E, , Heitman J, , Hoang L, , Leslie MJ, , MacDougall L, , Magill SS, , Morshed MG, , Marr KA , Cryptococcus gattii Working Group of the Pacific Northwest . 2009. Spread of Cryptococcus gattii into Pacific Northwest region of the United States. Emerg Infect Dis 15 : 1185 1191.[PubMed]
39. de Almeida Júnior JN, , Hennequin C . 2016. Invasive Trichosporon infection: a systematic review on a re-emerging fungal pathogen. Front Microbiol 7 : 1629.[CrossRef]
40. de Hoog GS, , Charturvedi V, , Denning DW, , Dyer PS, , Frisvad JC, , Geiser D, , Gräser Y, , Guarro J, , Haase G, , Kwon-Chung KJ, , Meis JF, , Meyer W, , Pitt JI, , Samson RA, , Taylor JW, , Tintelnot K, , Vitale RG, , Walsh TJ, , Lackner M , and the ISHAM Working Group on Nomenclature of Medical Fungi . 2015. Name changes in medically important fungi and their implications for clinical practice. J Clin Microbiol 53 : 1056 1062.[CrossRef]
41. de Hoog GS, , Dukik K, , Monod M, , Packeu A, , Stubbe D, , Hendrickx M, , Kupsch C, , Stielow JB, , Freeke J, , Göker M, , Rezaei-Matehkolaei A, , Mirhendi H, , Gräser Y . 2017. Toward a novel multilocus phylogenetic taxonomy for the dermatophytes. Mycopathologia 182 : 5 31.[PubMed]
42. de Hoog GS, , Guarro J, , Gené J, , Figueras MJ . Atlas of Clinical Fungi. The ultimate benchtool for diagnostics. Version 4.1.4. http://www.clinicalfungi.org
43. de Hoog GS, , Haase G, , Chaturvedi V, , Walsh TJ, , Meyer W, , Lackner M. 2013. Taxonomy of medically important fungi in the molecular era. Lancet Infect Dis 13 : 385 386.[CrossRef]
44. DeLucca A, , Walsh TJ,. 2015. Mycotoxins of Fusarium spp.: biochemistry and toxicology, p 323 354. In Russell R,, Paterson M,, Lima N (ed), Molecular Biology of Food and Water Borne Mycotoxigenic and Mycotic Fungi. CRC Press, Boca Raton, FL.
45. de Valk HA, , Klaassen CH, , Meis JF . 2008. Molecular typing of Aspergillus species. Mycoses 51 : 463 476.[CrossRef]
46. Durán Graeff L, , Seidel D, , Vehreschild MJ, , Hamprecht A, , Kindo A, , Racil Z, , Demeter J, , De Hoog S, , Aurbach U, , Ziegler M, , Wisplinghoff H, , Cornely OA , FungiScope Group . 2017. Invasive infections due to Saprochaete and Geotrichum species: report of 23 cases from the FungiScope Registry. Mycoses 60 : 273 279.[PubMed]
47. Ebersberger I, , de Matos Simoes R, , Kupczok A, , Gube M, , Kothe E, , Voigt K, , von Haeseler A . 2012. A consistent phylogenetic backbone for the fungi. Mol Biol Evol 29 : 1319 1334.[CrossRef]
48. El-Herte RI, , Schouweiler KE, , Farah RS, , Arbulu R, , Diekema D, , Wanat KA, , Ford BA . 2014. Phaeoacremonium parasiticum phaeohyphomycosis in a patient with systemic lupus erythematosus treated successfully with surgical debridement and voriconazole: a case report and review of the literature. IDCases 1 : 84 88. http://europepmc.org/abstract/pmc/pmc4735079[CrossRef]
49. Elinav H, , Izhar U, , Benenson S, , Admon D, , Hidalgo-Grass C, , Polacheck I, , Korem M . 2009. Invasive Scytalidium dimidiatum infection in an immunocompetent adult. J Clin Microbiol 47 : 1259 1263.[PubMed]
50. Enache-Angoulvant A, , Hennequin C . 2005. Invasive Saccharomyces infection: a comprehensive review. Clin Infect Dis 41 : 1559 1568.[PubMed]
51. Farina C, , Russello G, , Andreoni S, , Bonetti C, , Conte M, , Fazi P, , Lombardi G, , Luzzaro F, , Manso E, , Marone P, , Passera M, , Rocchetti A, , Sanna S, , Viganò EF ; Medical Mycology Committee (CoSM), Italian Society of Clinical Microbiology (AMCLI) . 2012. Microarray technology for yeast identification directly from positive blood cultures. A multicenter Italian experience. Med Mycol 50 : 549 555.[CrossRef]
52. Farmakiotis D, , Kontoyiannis DP . 2016. Mucormycoses. Infect Dis Clin North Am 30 : 143 163.[PubMed]
53. Fisher MC, , Koenig GL, , White TJ, , Taylor JW . 2002. Molecular and phenotypic description of Coccidioides posadasii sp. nov., previously recognized as the non-California population of Coccidioides immitis. Mycologia 94 : 73 84.[PubMed]
54. Frost HM, , Anderson J, , Ivacic L, , Meece J . 2017. Blastomycosis in children: an analysis of clinical, epidemiologic, and genetic features. J Pediatric Infect Dis Soc 6 : 49 56.[CrossRef]
55. Gaitanis G, , Magiatis P, , Hantschke M, , Bassukas ID, , Velegraki A . 2012. The Malassezia genus in skin and systemic diseases. Clin Microbiol Rev 25 : 106 141.[CrossRef]
56. Galgiani JN, , Ampel NM, , Blair JE, , Catanzaro A, , Geertsma F, , Hoover SE, , Johnson RH, , Kusne S, , Lisse J, , MacDonald JD, , Meyerson SL, , Raksin PB, , Siever J, , Stevens DA, , Sunenshine R, , Theodore N . 2016. 2016 Infectious Diseases Society of America (IDSA) Clinical Practice Guideline for the Treatment of Coccidioidomycosis. Clin Infect Dis 63 : e112 e146.[PubMed]
57. Garcia-Hermoso D, , Alanio A, , Lortholary O, , Dromer F, . 2015. Agents of systemic and subcutaneous mucormycosis and entomophthoromycosis, p 2087 2108. In Jorgensen JH,, Pfaller MA,, Carroll KC,, Funke G,, Landry ML,, Richter SS,, Warnock DW (ed), Manual of Clinical Microbiology, 11th ed. ASM Press, Washington, DC.
58. Gianni C, , Caretta G, , Romano C . 2003. Skin infection due to Geomyces pannorum var. pannorum. Mycoses 46 : 430 432.[PubMed]
59. Gilgado F, , Cano J, , Gené J, , Sutton DA, , Guarro J . 2008. Molecular and phenotypic data supporting distinct species statuses for Scedosporium apiospermum and Pseudallescheria boydii and the proposed new species Scedosporium dehoogii. J Clin Microbiol 46 : 766 771.[PubMed]
60. Gil-Lamaignere C, , Roilides E, , Hacker J, , Müller FM . 2003. Molecular typing for fungi—a critical review of the possibilities and limitations of currently and future methods. Clin Microbiol Infect 9 : 172 185.[CrossRef]
61. Giraldo A, , Sutton DA, , Samerpitak K, , de Hoog GS, , Wiederhold NP, , Guarro J, , Gené J . 2014. Occurrence of Ochroconis and Verruconis species in clinical specimens from the United States. J Clin Microbiol 52 : 4189 4201.[PubMed]
62. Girard V, , Mailler S, , Polsinelli S, , Jacob D, , Saccomani MC, , Celliere B, , Monnin V, , van Belkum A, , Hagen F, , Meis JF, , Durand G . 2017. Routine identification of Nocardia species by MALDI-TOF mass spectrometry. Diagn Microbiol Infect Dis 87 : 7 10.[PubMed]
63. Girmenia C, , Pizzarelli G, , Cristini F, , Barchiesi F, , Spreghini E, , Scalise G, , Martino P . 2006. Candida guilliermondii fungemia in patients with hematologic malignancies. J Clin Microbiol 44 : 2458 2464.[PubMed]
64. Goodwin S, , McPherson JD, , McCombie WR . 2016. Coming of age: ten years of next-generation sequencing technologies. Nat Rev Genet 17 : 333 351.[CrossRef]
65. Gregory TR. 2008. Understanding evolutionary trees. Evo Edu Outreach 1 : 121 137.[CrossRef]
66. Gu Z, , Hall TA, , Frinder M, , Walsh TJ, , Hayden RT . 2012. Evaluation of repetitive sequence PCR and PCR-mass spectrometry for the identification of clinically relevant Candida species. Med Mycol 50 : 259 265.[CrossRef]
67. Guarro J, , de Hoog S, . 2015. Curvularia, Exophiala, Scedosporium, Sporothrix, and other melanized fungi, p 2153 2172. In Jorgensen JH,, Pfaller MA,, Carroll KC,, Funke G,, Landry ML,, Richter SS,, Warnock DW (ed), Manual of Clinical Microbiology, 11th ed. ASM Press, Washington, DC.
68. Guarro J, , Gams W, , Pujol I, , Gené J . 1997. Acremonium species: new emerging fungal opportunists—in vitro antifungal susceptibilities and review. Clin Infect Dis 25 : 1222 1229.[PubMed]
69. Guého E, , Midgley G, , Guillot J . 1996. The genus Malassezia with description of four new species. Antonie Van Leeuwenhoek 69 : 337 355.[PubMed]
70. Guého E, , Smith MT, , de Hoog GS, , Billon-Grand G, , Christen R, , Batenburg-van der Vegte WH . 1992. Contributions to a revision of the genus Trichosporon. Antonie Van Leeuwenhoek 61 : 289 316.[PubMed]
71. Hageskal G, , Kristensen R, , Fristad RF, , Skaar I . 2011. Emerging pathogen Aspergillus calidoustus colonizes water distribution systems. Med Mycol 49 : 588 593.[PubMed]
72. Hall BG. 2007. Phylogenetic Trees Made Easy: A How-To Manual, 3rd ed. Sinauer Associates, Sunderland, MA.
73. Hawkes M, , Rennie R, , Sand C, , Vaudry W . 2005. Aureobasidium pullulans infection: fungemia in an infant and a review of human cases. Diagn Microbiol Infect Dis 51 : 209 213.[PubMed]
74. Hawkins DM, , Smidt AC . 2014. Superficial fungal infections in children. Pediatr Clin North Am 61 : 443 455.[CrossRef]
75. Hawksworth DL. 2011. A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names. MycoKeys 1 : 7 20.[CrossRef]
76. Hazen KC, , Howell SA, . 2016. Specimen selection, collection, and transport, p 8.2.1 8.2.6. In Leber AL, ed in chief, Clinical Microbiology Procedures Handbook, 4th ed. ASM Press, Washington, DC.
77. Hazen KC, , Howell SA, . 2016. Processing specimens for fungal culture, p 8.4.1 8.4.6. In Leber AL, ed in chief, Clinical Microbiology Procedures Handbook, 4th ed. ASM Press, Washington, DC.
78. Hazen KC, , Howell SA, . 2016. Mould identification, p 8.9.1 8.9.59. In Leber AL, ed in chief, Clinical Microbiology Procedures Handbook, 4th ed. ASM Press, Washington, DC.
79. Hazen KC, , Stei J, , Darracott C, , Breathnach A, , May J, , Howell SA . 2005. Isolation of cholesterol-dependent Candida glabrata from clinical specimens. Diagn Microbiol Infect Dis 52 : 35 37.[PubMed]
80. Healey KR, , Jimenez Ortigosa C, , Shor E, , Perlin DS . 2016. Genetic drivers of multidrug resistance in Candida glabrata. Front Microbiol 7 : 1995.[CrossRef]
81. Henrich TJ, , Marty FM, , Milner DA, Jr, , Thorner AR . 2009. Disseminated Geotrichum candidum infection in a patient with relapsed acute myelogenous leukemia following allogeneic stem cell transplantation and review of the literature. Transpl Infect Dis 11 : 458 462.[PubMed]
82. Henriet SS, , Verweij PE, , Warris A . 2012. Aspergillus nidulans and chronic granulomatous disease: a unique host-pathogen interaction. J Infect Dis 206 : 1128 1137.[PubMed]
83. Hettick JM, , Green BJ, , Buskirk AD, , Kashon ML, , Slaven JE, , Janotka E, , Blachere FM, , Schmechel D, , Beezhold DH . 2008. Discrimination of Aspergillus isolates at the species and strain level by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry fingerprinting. Anal Biochem 380 : 276 281.[CrossRef]
84. Hibbett D, , Abarenkov K, , Kõljalg U, , Öpik M, , Chai B, , Cole J, , Wang Q, , Crous P, , Robert V, , Helgason T, , Herr JR, , Kirk P, , Lueschow S, , O’Donnell K, , Nilsson RH, , Oono R, , Schoch C, , Smyth C, , Walker DM, , Porras-Alfaro A, , Taylor JW, , Geiser DM . 2016. Sequence-based classification and identification of Fungi. Mycologia 108 : 1049 1068.[CrossRef]
85. Hoang LM, , Philips P, , Galanis E . 2011. Cryptococcus gattii: a review of the epidemiology, clinical presentation, diagnosis, and management of this endemic yeast in the Pacific Northwest. Clin Microbiol Newsl 33 : 187 195.[CrossRef]
86. Hospenthal DR, , Beckius ML, , Floyd KL, , Horvath LL, , Murray CK . 2006. Presumptive identification of Candida species other than C. albicans, C. krusei, and C. tropicalis with the chromogenic medium CHROMagar Candida. Ann Clin Microbiol Antimicrob 5 : 1 5.[PubMed]
87. Hospenthal DR, , Rinaldi MG (ed). 2008. Diagnosis and Treatment of Human Mycoses. Humana Press, Totowa, NJ.
88. Hsieh TT, , Tseng HK, , Sun PL, , Wu YH, , Chen GS . 2013. Disseminated zygomycosis caused by Cunninghamella bertholletiae in patient with hematological malignancy and review of published case reports. Mycopathologia 175 : 99 106.[PubMed]
89. Hubka V, , Mencl K, , Skorepova M, , Lyskova P, , Zalabska E . 2011. Phaeohyphomycosis and onychomycosis due to Chaetomium spp., including the first report of Chaetomium brasiliense infection. Med Mycol 49 : 724 733.[PubMed]
90. Ilkit M, , Durdu M . 2015. Tinea pedis: the etiology and global epidemiology of a common fungal infection. Crit Rev Microbiol 41 : 374 388.[PubMed]
91. Inderbitzin P, , Bostock RM, , Davis RM, , Usami T, , Platt HW, , Subbarao KV . 2011. Phylogenetics and taxonomy of the fungal vascular wilt pathogen Verticillium, with the descriptions of five new species. PLoS One 6 : e28341.[CrossRef]
92. Jagielski T, , Sandoval-Denis M, , Yu J, , Yao L, , Bakuła Z, , Kalita J, , Skóra M, , Krzys´ciak P, , de Hoog GS, , Guarro J, , Gené J . 2016. Molecular taxonomy of scopulariopsis-like fungi with description of new clinical and environmental species. Fungal Biol 120 : 586 602.[PubMed]
93. Kane J, , Summerbell R, , Sigler L, , Krajden S, , Land G. 1997. Laboratory Handbook of Dermatophytes. Star Publishing Co, Belmont, CA.
94. Kaneko T, , Makimura K, , Abe M, , Shiota R, , Nakamura Y, , Kano R, , Hasegawa A, , Sugita T, , Shibuya S, , Watanabe S, , Yamaguchi H, , Abe S, , Okamura N . 2007. Revised culture-based system for identification of Malassezia species. J Clin Microbiol 45 : 3737 3742.[PubMed]
95. Kantarcioglu AS, , de Hoog GS, , Guarro J . 2012. Clinical characteristics and epidemiology of pulmonary pseudallescheriasis. Rev Iberoam Micol 29 : 1 13.[PubMed]
96. Kapadia M, , Rolston KVI, , Han XY . 2007. Invasive Streptomyces infections: six cases and literature review. Am J Clin Pathol 127 : 619 624[PubMed]
97. Kathuria S, , Singh PK, , Sharma C, , Prakash A, , Masih A, , Kumar A, , Meis JF, , Chowdhary A . 2015. Multidrug-resistant Candida auris misidentified as Candida haemulonii: characterization by matrix-assisted laser desorption ionization–time of flight mass spectrometry and DNA sequencing and its antifungal susceptibility profile variability by Vitek 2, CLSI Broth Microdilution, and Etest Method. J Clin Microbiol 53 : 1823 1830.[CrossRef]
98. Katragkou A, , Dotis J, , Kotsiou M, , Tamiolaki M, , Roilides E . 2007. Scedosporium apiospermum infection after near-drowning. Mycoses 50 : 412 421.[PubMed]
99. Katragkou A, , Pana ZD, , Perlin DS, , Kontoyiannis DP, , Walsh TJ, , Roilides E . 2014. Exserohilum infections: review of 48 cases before the 2012 United States outbreak. Med Mycol 52 : 376 386.[PubMed]
100. Kauffman CA . 2007. Histoplasmosis: a clinical and laboratory update. Clin Microbiol Rev 20 : 115 132.[PubMed]
101. Kemna ME, , Neri RC, , Ali R, , Salkin IF . 1994. Cokeromyces recurvatus, a mucoraceous zygomycete rarely isolated in clinical laboratories. J Clin Microbiol 32 : 843 845.[PubMed]
102. Kent D, , Wong T, , Osgood R, , Kosinski K, , Coste G, , Bor D . 1998. Fungemia due to Hormonema dematioides following intense avian exposure. Clin Infect Dis 26 : 759 760.[PubMed]
103. Kenyon C, , Bonorchis K, , Corcoran C, , Meintjes G, , Locketz M, , Lehloenya R, , Vismer HF, , Naicker P, , Prozesky H, , van Wyk M, , Bamford C, , du Plooy M, , Imrie G, , Dlamini S, , Borman AM, , Colebunders R, , Yansouni CP, , Mendelson M, , Govender NP . 2013. A dimorphic fungus causing disseminated infection in South Africa. N Engl J Med 369 : 1416 1424.[PubMed]
104. Khunnamwong P, , Lertwattanasakul N, , Jindamorakot S, , Limtong S, , Lachance MA . 2015. Description of Diutina gen. nov., Diutina siamensis, f.a. sp. nov., and reassignment of Candida catenulata, Candida mesorugosa, Candida neorugosa, Candida pseudorugosa, Candida ranongensis, Candida rugosa and Candida scorzettiae to the genus Diutina. Int J Syst Evol Microbiol 65 : 4701 4709.[PubMed]
105. Kidd S, , Halliday C, , Alexiou H, , Ellis D . 2016. Descriptions of Medical Fungi, 3rd ed. Australian and New Zealand Mycology Interest Group. (Published by the authors.) http://www.mycology.adelaide.edu.au/docs/fungus3-book.pdf.
106. Kimura M, , McGinnis MR . 1998. Fontana-Masson–stained tissue from culture-proven mycoses. Arch Pathol Lab Med 122 : 1107 1111.[PubMed]
107. Kimura M, , Smith MB, , McGinnis MR . 1999. Zygomycosis due to Apophysomyces elegans: report of 2 cases and review of the literature. Arch Pathol Lab Med 123 : 386 390.[PubMed]
108. Klein KR, , Hall L, , Deml SM, , Rysavy JM, , Wohlfiel SL, , Wengenack NL . 2009. Identification of Cryptococcus gattii by use of L-canavanine glycine bromothymol blue medium and DNA sequencing. J Clin Microbiol 47 : 3669 3672.[PubMed]
109. Kondori N, , Gilljam M, , Lindblad A, , Jönsson B, , Moore ER, , Wennerås C . 2011. High rate of Exophiala dermatitidis recovery in the airways of patients with cystic fibrosis is associated with pancreatic insufficiency. J Clin Microbiol 49 : 1004 1009.[PubMed]
110. Koneman EW, , Roberts GD,. 1991. Mycotic disease, p 1099 1130. In Henry JB (ed), Clinical Diagnosis and Management by Laboratory Methods, 18th ed. WB Saunders Co, Philadelphia, PA.
111. Kosmidis C, , Denning DW . 2015. The clinical spectrum of pulmonary aspergillosis. Thorax 70 : 270 277.[PubMed]
112. Kousha M, , Tadi R, , Soubani AO . 2011. Pulmonary aspergillosis: a clinical review. Eur Respir Rev 20 : 156 174.[PubMed]
113. Kuhn DM, , Ghannoum MA . 2003. Indoor mold, toxigenic fungi, and Stachybotrys chartarum: infectious disease perspective. Clin Microbiol Rev 16 : 144 172.[PubMed]
114. Kullberg BJ, , Arendrup MC . 2015. Invasive candidiasis. N Engl J Med 373 : 1445 1456.[PubMed]
115. Kumar A, , Sachu A, , Mohan K, , Vinod V, , Dinesh K, , Karim S . 2017. Simple low cost differentiation of Candida auris from Candida haemulonii complex using CHROMagar Candida medium supplemented with Pal’s medium. Rev Iberoam Micol 34 : 109 111.[PubMed]
116. Kurtzman CP, , Fell JW (ed). 2000. The Yeasts, a Taxonomic Study, 4th ed. Elsevier, Amsterdam, The Netherlands.
117. Kurtzman CP, , Fell JW, , Boekhout T (ed). 2010. The Yeasts, a Taxonomic Study, 5th ed. Elsevier, Amsterdam, The Netherlands.
118. Kwon-Chung KJ. 2012. Taxonomy of fungi causing mucormycosis and entomophthoramycosis (zygomycosis) and nomenclature of the disease: molecular mycologic perspectives. Clin Infect Dis 54( Suppl 1) : S8 S15.[PubMed]
119. Kwon-Chung KJ, , Bennett JE . 1992. Medical Mycology. Lea & Febiger, Philadelphia, PA.
120. Kwon-Chung KJ, , Bennett JE, , Wickes BL, , Meyer W, , Cuomo CA, , Wollenburg KR, , Bicanic TA, , Castañeda E, , Chang YC, , Chen J, , Cogliati M, , Dromer F, , Ellis D, , Filler SG, , Fisher MC, , Harrison TS, , Holland SM, , Kohno S, , Kronstad JW, , Lazera M, , Levitz SM, , Lionakis MS, , May RC, , Ngamskulrongroj P, , Pappas PG, , Perfect JR, , Rickerts V, , Sorrell TC, , Walsh TJ, , Williamson PR, , Xu J, , Zelazny AM, , Casadevall A . 2017. The case for adopting the “species complex” nomenclature for the etiologic agents of cryptococcosis. mSphere 2 : e00357-16.[CrossRef]
121. Lackner M, , de Hoog GS, , Verweij PE, , Najafzadeh MJ, , Curfs-Breuker I, , Klaassen CH, , Meis JF . 2012. Species-specific antifungal susceptibility patterns of Scedosporium and Pseudallescheria species. Antimicrob Agents Chemother 56 : 2635 2642.[PubMed]
122. Lackner M, , de Hoog GS, , Rambach G, , Speth C, , Robert V, , Buzina W, , Chen S, , Bouchara JP, , Cano-Lira JF, , Guarro J, , Gené J, , Fernandez Silva F, , Yang L, , Haido R, , Haase GM, , Havlicek V, , Garcia-Hermoso D, , Meis JF, , Hagen F, , Kirchmair N, , Rainer J, , Schwabenbauer K, , Zoderer M, , Moreno LF, , Meyer W, , Gilgado F, , Schwabenbauer K, , Vicente VA, , Piecková E, , Regenermel M, , Rath PM, , Steinmann J, , Wellington de Alencar X, , Symoens F, , Ahmed SA, , Tintelnot K, , Ulfig K, , Velegraki A, , Tortorano AM, , Giraud S, , Mina S, , Rigler-Hohenwarter K, , Hernando FL, , Ramirez-Garcia A, , Pellon A, , Andreas F, , Kaur J, , Bergter EB, , Vieira de Meirelles J, , Dutra da Silva I, , Delhaes L, , Alastruey-Izquerdo A, , Li RY, , Lu Q, , Moussa T, , Almaghrabi O, , Kaltseis J, , Al-Zahrani H, , Okada G, , Deng S, , Liao W, , Zeng J, , Issakainen J, , Lopes LC, , Nagl M, , Lass-Flörl C, , Risslegger B . 2014. Proposed nomenclature for Pseudallescheria, Scedosporium and related genera. Fungal Diversity 67 : 1 10.
123. Landlinger C, , Preuner S, , Willinger B, , Haberpursch B, , Racil Z, , Mayer J, , Lion T . 2009. Species-specific identification of a wide range of clinically relevant fungal pathogens by use of Luminex xMAP technology. J Clin Microbiol 47 : 1063 1073.[CrossRef]
124. Larone DH . 1989. The identification of dematiaceous fungi. Clin Microbiol Newsl 11 : 145 150.[CrossRef]
125. Larone DH, , Walsh TJ . 2013. Exserohilum rostratum: anatomy of a national outbreak of fungal meningitis. Clin Microbiol Newsl 35 : 185 193.
126. Lass-Flörl C, , Griff K, , Mayr A, , Petzer A, , Gastl G, , Bonatti H, , Freund M, , Kropshofer G, , Dierich MP, , Nachbaur D . 2005. Epidemiology and outcome of infections due to Aspergillus terreus: 10-year single centre experience. Br J Haematol 131 : 201 207.[PubMed]
127. Lass-Flörl C, , Mayr A . 2007. Human protothecosis. Clin Microbiol Rev 20 : 230 242.[PubMed]
128. Latgé JP, , Steinbach WJ (ed). 2009. Aspergillus fumigatus and Aspergillosis. ASM Press, Washington, DC.
129. Lau A, , Chen S, , Sleiman S, , Sorrell T . 2009. Current status and future perspectives on molecular and serological methods in diagnostic mycology. Future Microbiol 4 : 1185 1222.[CrossRef]
130. Leber AL, , Everhart K, , Balada-Llasat JM, , Cullison J, , Daly J, , Holt S, , Lephart P, , Salimnia H, , Schreckenberger PC, , DesJarlais S, , Reed SL, , Chapin KC, , LeBlanc L, , Johnson JK, , Soliven NL, , Carroll KC, , Miller JA, , Dien Bard J, , Mestas J, , Bankowski M, , Enomoto T, , Hemmert AC, , Bourzac KM . 2016. Multicenter evaluation of BioFire FilmArray Meningitis/Encephalitis Panel for detection of bacteria, viruses, and yeast in cerebrospinal fluid specimens. J Clin Microbiol 54 : 2251 2261.[CrossRef]
131. Leek R, , Aldag E, , Nadeem I, , Gunabushanam V, , Sahajpal A, , Kramer DJ, , Walsh TJ . 2016. Scedosporiosis in a combined kidney and liver transplant recipient: a case report of possible transmission from a near-drowning donor. Case Rep Transplant 2016 : 1879529.[PubMed]
132. Leeming JP, , Notman FH . 1987. Improved methods for isolation and enumeration of Malassezia furfur from human skin. J Clin Microbiol 25 : 2017 2019.[PubMed]
133. Levenson D, , Pfaller MA, , Smith MA, , Hollis R, , Gerarden T, , Tucci CB, , Isenberg HD . 1991. Candida zeylanoides: another opportunistic yeast. J Clin Microbiol 29 : 1689 1692.[PubMed]
134. Levenstadt JS, , Poutanen SM, , Mohan S, , Zhang S, , Silverman M . 2012. Pleurostomophora richardsiae—an insidious fungus presenting in a man 44 years after initial inoculation: a case report and review of the literature. Can J Infect Dis Med Microbiol 23 : 110 113.[CrossRef]
135. Liao Y, , Lu X, , Yang S, , Luo Y, , Chen Q, , Yang R . 2015. Epidemiology and outcome of Trichosporon fungemia: a review of 185 reported cases from 1975 to 2014. Open Forum Infect Dis 2 : ofv141.[PubMed]
136. Lichon V, , Khachemoune A . 2006. Mycetoma: a review. Am J Clin Dermatol 7 : 315 321.[CrossRef]
137. Litvintseva AP, , Brandt ME, , Mody RK, , Lockhart SR . 2015. Investigating fungal outbreaks in the 21st century. PLoS Pathog 11 : e1004804.[CrossRef]
138. Liu K, , Howell DN, , Perfect JR, , Schell WA . 1998. Morphologic criteria for the preliminary identification of Fusarium, Paecilomyces, and Acremonium species by histopathology. Am J Clin Pathol 109 : 45 54.[PubMed]
139. Liu WC, , Chan MC, , Lin TY, , Hsu CH, , Chiu SK . 2013. Candida lipolytica candidemia as a rare infectious complication of acute pancreatitis: a case report and literature review. J Microbiol Immunol Infect 46 : 393 396.[PubMed]
140. Lockhart SR, , Etienne KA, , Vallabhaneni S, , Farooqi J, , Chowdhary A, , Govender NP, , Colombo AL, , Calvo B, , Cuomo CA, , Desjardins CA, , Berkow EL, , Castanheira M, , Magobo RE, , Jabeen K, , Asghar RJ, , Meis JF, , Jackson B, , Chiller T, , Litvintseva AP . 2017. Simultaneous emergence of multidrug-resistant Candida auris on 3 continents confirmed by whole-genome sequencing and epidemiological analyses. Clin Infect Dis 64 : 134 140.[PubMed]
141. Loulergue P, , Bastides F, , Baudouin V, , Chandenier J, , Mariani-Kurkdjian P, , Dupont B, , Viard JP, , Dromer F, , Lortholary O . 2007. Literature review and case histories of Histoplasma capsulatum var. duboisii infections in HIV-infected patients. Emerg Infect Dis 13 : 1647 1652.[PubMed]
142. Lyons JL, , Gireesh ED, , Trivedi JB, , Bell WR, , Cettomai D, , Smith BR, , Karram S, , Chang T, , Tochen L, , Zhang SX, , McCall CM, , Pearce DT, , Carroll KC, , Chen L, , Ratchford JN, , Harrison DM, , Ostrow LW, , Stevens RD . 2012. Fatal Exserohilum meningitis and central nervous system vasculitis after cervical epidural methylprednisolone injection. Ann Intern Med 157 : 835 836.[PubMed]
143. Mackay J, , Landt O . 2007. Real-time PCR fluorescent chemistries. Methods Mol Biol 353 : 237 261.[CrossRef]
144. Madrid H, , da Cunha KC, , Gené J, , Dijksterhuis J, , Cano J, , Sutton DA, , Guarro J, , Crous PW . 2014. Novel Curvularia species from clinical specimens. Persoonia 33 : 48 60.[PubMed]
145. Manamgoda DS, , Rossman AY, , Castlebury LA, , Chukeatirote E, , Hyde K . 2015. A taxonomic and phylogenetic re-appraisal of the genus Curvularia ( Pleosporaceae): human and plant pathogens. Phytotaxa 212 : 175 198.[CrossRef]
146. Manamgoda DS, , Rossman AY, , Castlebury LA, , Crous PW, , Madrid H, , Chukeatirote E, , Hyde KD . 2014. The genus Bipolaris. Stud Mycol 79 : 221 288.[CrossRef]
147. Marimon R, , Cano J, , Gené J, , Sutton DA, , Kawasaki M, , Guarro J . 2007. Sporothrix brasiliensis, S. globosa, and S. mexicana, three new Sporothrix species of clinical interest. J Clin Microbiol 45 : 3198 3206.[PubMed]
148. May RC, , Stone NR, , Wiesner DL, , Bicanic T, , Nielsen K . 2016. Cryptococcus: from environmental saprophyte to global pathogen. Nat Rev Microbiol 14 : 106 117.[PubMed]
149. McCarthy M, , Rosengart A, , Schuetz AN, , Kontoyiannis DP, , Walsh TJ . 2014. Mold infections of the central nervous system. N Engl J Med 371 : 150 160.[PubMed]
150. McCarthy MW, , Aguilar-Zapata D, , Petraitis V, , Walsh TJ . 2017. Diagnosis, classification, and therapeutic interventions for sinopulmonary aspergillosis. Expert Rev Respir Med 11 : 229 238.[PubMed]
151. McCarthy MW, , Walsh TJ . 2017. Containment strategies to address the expanding threat of multidrug-resistant Candida auris. Expert Rev Anti Infect Ther 15 : 1095 1099.[PubMed]
152. McGinnis MR . 1980. Laboratory Handbook of Medical Mycology. Academic Press, New York, NY.
153. McGinnis MR, , Rinaldi MG, , Winn RE . 1986. Emerging agents of phaeohyphomycosis: pathogenic species of Bipolaris and Exserohilum. J Clin Microbiol 24 : 250 259.[PubMed]
154. McGough DA, , Fothergill AW, , Rinaldi MG . 1990. Cokeromyces recurvatus Poitras, a distinctive zygomycete and potential pathogen: criteria for identification. Clin Microbiol Newsl 12 : 113 117.[CrossRef]
155. McGowan KL, . 2015. Specimen collection, transport, and processing: mycology, p 1944 1954. In Jorgensen JH,, Pfaller MA,, Carroll KC,, Funke G,, Landry ML,, Richter SS,, Warnock DW (ed), Manual of Clinical Microbiology, 11th ed. ASM Press, Washington, DC.