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Part I : Direct Microscopic Examination of Clinical Specimens
Authors:
Thomas J. Walsh1,
Randall T. Hayden3,
Davise H. Larone4
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Affiliations:
1: Weill Cornell Medicine of Cornell University, New York;
2: Presbyterian Hospital, and Hospital for Special Surgery, New York, New York;
3: St. Jude Children’s Research Hospital, Memphis, Tennessee;
4: Professor Emerita, Weill Medical College of Cornell University, New York, New York
Content Type: Reference
Publication Year:
2018
Category: Clinical Microbiology
Book DOI:
10.1128/9781555819880
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
Figures
Direct Microscopic Examination of Clinical Specimens
Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig1
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig2
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig3
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig4
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig5
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig6
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig7
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig8
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig9
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig10
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig11
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig12
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig13
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig14
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig15
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig16
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig17
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig18
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig19
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig20
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig21
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig22
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig23
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.part1fig24
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
References
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1.
Chandler FW,, Watts JC . 1987. Pathologic Diagnosis of Fungal Infections. American Society of Clinical Pathology Press, Chicago, IL.
2.
Connor DH,, Chandler FW,, Schwartz DA,, Manz H,, Lack EE . 1997. Pathology of Infectious Diseases. Appleton & Lange, Stamford, CT.
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Kimura M,, McGinnis MR . 1998. Fontana-Masson–stained tissue from culture-proven mycoses. Arch Pathol Lab Med 122 : 1107– 1111.[PubMed]
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Koneman EW,, Roberts GD, . 1991. Mycotic disease, p. 1099– 1130. In Henry JB (ed), Clinical Diagnosis and Management by Laboratory Methods, 18th ed. W B Saunders Co, Philadelphia, PA.
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Kwon-Chung KJ,, Bennett JE . 1992. Medical Mycology. Lea & Febiger, Philadelphia, PA.
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Liu K,, Howell DN,, Perfect JR,, Schell WA . 1998. Morphologic criteria for the preliminary identification of Fusarium, Paecilomyces, and Acremonium species by histopathology. Am J Clin Pathol 109 : 45– 54.[PubMed]
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Obana Y,, Sano M,, Jike T,, Homma T,, Nemoto N . 2010. Differential diagnosis of trichosporonosis using conventional histopathological stains and electron microscopy. Histopathology 56 : 372– 383.[PubMed]
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Salfelder K . 1990. Atlas of Fungal Pathology. Kluwer Academic Publishers, Dordrecht, The Netherlands.
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Sangoi AR,, Rogers WM,, Longacre TA,, Montoya JG,, Baron EJ,, Banaei N . 2009. Challenges and pitfalls of morphologic identification of fungal infections in histologic and cytologic specimens: a ten-year retrospective review at a single institution. Am J Clin Pathol 133 : 364– 375.[PubMed]
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Schnadig VJ,, Woods GL, . 2009. Histopathology of fungal infections, p 79–108. In Anaissie EJ,, McGinnis MR,, Pfaller MA (ed), Clinical Mycology, 2nd ed. Elsevier, New York, NY.
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Schuetz AN,, Pisapia D,, Yan J,, Hoda RS . 2012. An atypical morphologic presentation of Coccidioides spp. in fine-needle aspiration of lung. Diagn Cytopathol 40 : 163– 167.[PubMed]
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Schuetz AN,, Walsh TJ . 2015. Importance of fungal histopathology in immunocompromised pediatric patients: it’s not just “ Aspergillus” anymore. Am J Clin Pathol 144 : 185– 187.[PubMed]
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Segal BH,, Walsh TJ,, Liu JM,, Wilson JD,, and Kwon-Chung KJ . 1998. Invasive infection with Fusarium chlamydosporum in a patient with aplastic anemia. J Clin Microbiol 36 : 1772– 1776.[PubMed]
Tables
Direct Microscopic Examination of Clinical Specimens
Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1
TABLE 1
Stains for direct microscopic observation of fungi and/or filamentous bacteria in tissue
TABLE 1
Stains for direct microscopic observation of fungi and/or filamentous bacteria in tissue
Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p1
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p2
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p3
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p4
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p5
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p6
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p7
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p8
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p9
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p10
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p11
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p12
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p13
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p14
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p15
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p16
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p17
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p18
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p19
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p20
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p21
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p22
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p23
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.
/content/10.1128/9781555819880.part_I.tab1p24
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Citation:
Walsh T, Hayden R, Larone D.
2018.
Direct Microscopic Examination of Clinical Specimens,
p 15-72.
In
Larone’s Medically Important Fungi: A Guide to Identification, Sixth Edition.
ASM Press, Washington, DC.